Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Actually clarify that there are actually 301 unique compounds, not 306 #33

Merged
merged 1 commit into from
Apr 4, 2024
Merged

Actually clarify that there are actually 301 unique compounds, not 306 #33

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
4 changes: 2 additions & 2 deletions README.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -32,7 +32,7 @@ This resource was created through the [JUMP-Cell Painting Consortium](https://ju

## JUMP-Target-Compound

There are 303 compounds in total, of which 46 are included as controls serving different goals
There are [301](https://github.com/jump-cellpainting/JUMP-Target/issues/9) compounds in total, of which 46 are included as controls serving different goals

1. `poscon_orf`: compounds that correlate strongly with (overexpressed) genes in previous Cell Painting experiments. There are 6 such compounds, and their corresponding 3 genes are included in `JUMP-Target-ORF` and `JUMP-Target-CRISPR`
1. `poscon_cp`: compounds with a strong association with the genes that they target, according to [ChemicalProbes.org](https://www.chemicalprobes.org/). There are 26 such compounds, and their corresponding 13 genes are included in `JUMP-Target-ORF` and `JUMP-Target-CRISPR`.
Expand Down Expand Up @@ -79,7 +79,7 @@ See https://github.com/jump-cellpainting/JUMP-Target/pull/32 for details about t


### Broad internal notes
- 303 compounds
- [301](https://github.com/jump-cellpainting/JUMP-Target/issues/9) compounds
- `JUMP-Target-1_Compound`:
- Compound Request Number: CR-12417 - placed by Niranj Chandrasekaran - $10,404
- 5 milliMolar 13.75 uL total volume (5 uL dead volume)
Expand Down