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Change md5 to hash and hash_algorithm, fix incompatibility #1367

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merged 16 commits into from
Nov 24, 2023

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Wh1isper
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Resolves #1366 mwouts/jupytext#1165 ploomber/ploomber#1144

Sorry for the breaking changes to the API. This should allow downstream optional support for md5.

@Wh1isper
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@LoicGrobol @fcollonval @marr75

Please review if this fixes most of the incompatibilities.

@blink1073
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In hindsight based on @bollwyvl's comment, I agree we should move to sha256, which is FIPS-compliant.

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@blink1073 Okay, I think I can change all the md5 to sha256. Do you want me to open another pr?

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We can re-use this one.

@Wh1isper Wh1isper changed the title Making MD5 optional for ContentManager Change md5 to sha256 and make it optional for ContentManager Nov 23, 2023
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Thanks! I think we should add jupytext as one of our downstream tests. Would you like to try that? If not I can do it in a follow up PR.

@blink1073 blink1073 added the bug label Nov 23, 2023
@Wh1isper
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@blink1073

I think we should add jupytext as one of our downstream tests. Would you like to try that?

Yeah, I'll give it a shot.

uses: jupyterlab/maintainer-tools/.github/actions/downstream-test@v1
with:
package_name: jupytext
test_command: pip install pytest-jupyter[server] gitpython pre-commit && python -m ipykernel install --name jupytext-dev --user && pytest -vv -raXxs -W default --durations 10 --color=yes --ignore=tests/test_doc_files_are_notebooks.py --ignore=tests/test_changelog.py
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test_doc_files_are_notebooks.py and test_changelog.py need docs floder, but not in the distribution.

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@fcollonval
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Thanks @Wh1isper to work quickly on a fix an @blink1073 to review the code.

I started something yesterday but did not get the chance to finish. Basically I was proposing to return two attributes hash and hash_algorithm to have something generic as security wise what is now secure may not be in the future.

My code was ready I was only looking at how to test this without explicitly adding a dependency like jupytext that may evolve in the future.

If you give 3h (it's still very early for me 😅) I can contribute to this one.

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Wh1isper commented Nov 23, 2023

@fcollonval 😄 Good morning, I've just finished lunch being in GMT+8.

Returning hash and hash_algorithm is a good idea, it requires us to have a HashManager and then choose a default hash_algorithm. I wonder if it would be possible to allow the client to choose the hash_algorithm, which might be useful (or maybe not).

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I'd like to try to add hash and hash_algorithm, please review this PR later.

Comment on lines 155 to 156
if cm.support_hash:
kwargs["require_hash"] = require_hash
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If the ContentsManager does not declare itself to support hash(by setting support_hash to True), handler will never pass require_hash argument to the ContentsManager.get.

I don't want to use hash for the argument as it's a built-in function.

@Wh1isper Wh1isper changed the title Change md5 to sha256 and make it optional for ContentManager Change md5 to hash and hash_algorithm, make compatible with ContentManager API. Nov 23, 2023
@Wh1isper Wh1isper changed the title Change md5 to hash and hash_algorithm, make compatible with ContentManager API. Change md5 to hash and hash_algorithm, fix incompatibility Nov 23, 2023
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Ready for review.

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@Wh1isper I pushed in fcollonval#1 a bunch of improvements. Feel free to cherry-pick them.

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I would also strongly suggest removing the downstream test against Jupytext because it is not an official Jupyter subproject and we don't have a say on it.

To check for no regression, my PR contains an appropriate ContentsManager mock up.

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I think it is fair to test against a handful of popular community projects. I've seen that pattern used by other projects like mypy and ruff.

@davidbrochart
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The file hash is actually something we could take advantage of in collaborative editing. We currently compare timestamps to check if the server was the one who saved the file last, and if not then we get the new content from disk.
Having a file hash would be more reliable. Thanks for the idea and for you work @Wh1isper!

Wh1isper and others added 4 commits November 24, 2023 00:33
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@fcollonval Thank you. I've learned a lot from that!

To pass the typing test, I added a number of # type: ignore.

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😀 I'd like to ask you to review again.

Thank you all!

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Thanks a lot for quickly working on this @Wh1isper

@blink1073 blink1073 merged commit ecd5b1f into jupyter-server:main Nov 24, 2023
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Thanks again @Wh1isper! I'll make a new release early next week.

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My pleasure. Thank you all :D

sigmarkarl added a commit to spotinst/jupyter_server that referenced this pull request Dec 13, 2023
* ContentsHandler return 404 rather than raise exc (jupyter-server#1357)

* Add more typings (jupyter-server#1356)

* Publish 2.10.1

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* typo: ServerApp (jupyter-server#1361)

* Support get file(notebook) md5 (jupyter-server#1363)

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* avoid unhandled error on some invalid paths (jupyter-server#1369)

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sigmarkarl added a commit to spotinst/jupyter_server that referenced this pull request Jan 15, 2024
* Create CODEOWNERS

* ContentsHandler return 404 rather than raise exc (jupyter-server#1357)

* Add more typings (jupyter-server#1356)

* Publish 2.10.1

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sigmarkarl added a commit to spotinst/jupyter_server that referenced this pull request Oct 8, 2024
* ContentsHandler return 404 rather than raise exc (jupyter-server#1357)

* Add more typings (jupyter-server#1356)

* Publish 2.10.1

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jupyter_server-2.12.4.tar.gz: 41f4a1e6b912cc24a7c6c694851b37d3d8412b180f43d72315fe422cb2b85cc2

* Bump to 2.13.0.dev0

* Improve warning handling (jupyter-server#1386)

* Publish 2.12.5

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jupyter_server-2.12.5.tar.gz: 0edb626c94baa22809be1323f9770cf1c00a952b17097592e40d03e6a3951689

* Bump to 2.13.0.dev0

* fix "Shutdown" -> "Shut down" (jupyter-server#1389)

* chore: update pre-commit hooks (jupyter-server#1390)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

* websockets: add configurations for ping interval and timeout (jupyter-server#1391)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

* Add deprecation note for `ServerApp.preferred_dir` (jupyter-server#1396)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

* Fix color in windows log console with colorama (jupyter-server#1397)

* Replace _jupyter_server_extension_paths in apidocs (jupyter-server#1393)

* Add an option to have authentication enabled for all endpoints by default (jupyter-server#1392)

* Update release workflows (jupyter-server#1399)

* Publish 2.13.0

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jupyter_server-2.13.0.tar.gz: c80bfb049ea20053c3d9641c2add4848b38073bf79f1729cea1faed32fc1c78e

* Bump to 2.14.0.dev0

* Pin to Pytest 7 (jupyter-server#1401)

* Update pytest requirement from <8,>=7.0 to >=7.0,<9 (jupyter-server#1402)

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Don't crash on invalid JSON in page_config (jupyter-server#1403) (jupyter-server#1404)

* Ignore zero-length page_config.json, restore previous behavior of crashing for invalid JSON (jupyter-server#1405)

* don't include token in dashboard link, when available (jupyter-server#1406)

* chore: update pre-commit hooks (jupyter-server#1409)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

* Update simple extension README to cd into correct subdirectory (jupyter-server#1410)

Co-authored-by: Mark Pizzutillo <pizmark@amazon.com>

* Set all min deps (jupyter-server#1411)

* Fix jupytext and lint CI failures (jupyter-server#1413)

* docs: list server extensions (jupyter-server#1412)

* Link to GitHub repo from the docs (jupyter-server#1415)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

* Publish 2.14.0

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jupyter_server-2.14.0.tar.gz: 659154cea512083434fd7c93b7fe0897af7a2fd0b9dd4749282b42eaac4ae677

* Bump to 2.15.0.dev0

* chore: update pre-commit hooks (jupyter-server#1421)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Steven Silvester <steven.silvester@ieee.org>

* Removing excessive logging from reading local files (jupyter-server#1420)

Co-authored-by: Kevin Bates <kbates4@gmail.com>

* Use hatch fmt command (jupyter-server#1424)

* Merge pull request from GHSA-hrw6-wg82-cm62

* filefind: avoid handling absolute paths

we don't need or want absolute path support,
which we inherited from generic ipython_genutils

only supporting relative paths lets us avoid attempting to accessing files we know we won't accept

* Apply suggestions from code review

Co-authored-by: M Bussonnier <bussonniermatthias@gmail.com>

* filefind: only accept Sequence[str]

we only call it one place, might as well be simple about it

* version_info gate for is_relative_to

* clarify docstring

Co-authored-by: Carol Willing <carolcode@willingconsulting.com>

---------

Co-authored-by: M Bussonnier <bussonniermatthias@gmail.com>
Co-authored-by: Carol Willing <carolcode@willingconsulting.com>

* Publish 2.14.1

SHA256 hashes:

jupyter_server-2.14.1-py3-none-any.whl: 16f7177c3a4ea8fe37784e2d31271981a812f0b2874af17339031dc3510cc2a5

jupyter_server-2.14.1.tar.gz: 12558d158ec7a0653bf96cc272bc7ad79e0127d503b982ed144399346694f726

* Bump to 2.15.0.dev0

* Update simple extension examples: _jupyter_server_extension_points (jupyter-server#1426)

* chore: update pre-commit hooks (jupyter-server#1427)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Steven Silvester <steven.silvester@ieee.org>

* Add Changelog for 2.14.1 (jupyter-server#1430)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

* chore: update pre-commit hooks (jupyter-server#1441)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Steven Silvester <steve.silvester@mongodb.com>

* Update documentation for `cookie_secret` (jupyter-server#1433)

* Do not log environment variables passed to kernels (jupyter-server#1437)

* Pass session_id during Websocket connect (jupyter-server#1440)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

* Publish 2.14.2

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jupyter_server-2.14.2-py3-none-any.whl: 47ff506127c2f7851a17bf4713434208fc490955d0e8632e95014a9a9afbeefd

jupyter_server-2.14.2.tar.gz: 66095021aa9638ced276c248b1d81862e4c50f292d575920bbe960de1c56b12b

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: Sam Bloomquist <bloomquist.sam@gmail.com>
Co-authored-by: Steven Silvester <steven.silvester@ieee.org>
Co-authored-by: blink1073 <blink1073@users.noreply.github.com>
Co-authored-by: IITII <ccmejx@gmail.com>
Co-authored-by: Zhongsheng Ji <9573586@qq.com>
Co-authored-by: Frédéric Collonval <fcollonval@gmail.com>
Co-authored-by: Min RK <benjaminrk@gmail.com>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Zachary Sailer <zsailer@apple.com>
Co-authored-by: Zsailer <Zsailer@users.noreply.github.com>
Co-authored-by: Nicholas Bollweg <nick.bollweg@gmail.com>
Co-authored-by: Michał Krassowski <5832902+krassowski@users.noreply.github.com>
Co-authored-by: Manu <21658174+epignot@users.noreply.github.com>
Co-authored-by: Emmanuel Pignot <emmanuel.pignot@netapp.com>
Co-authored-by: Zachary Sailer <zachsailer@gmail.com>
Co-authored-by: Gonzalo Tornaría <tornaria@gmail.com>
Co-authored-by: Marc Wouts <marc.wouts@gmail.com>
Co-authored-by: Yuvi Panda <yuvipanda@gmail.com>
Co-authored-by: Alex Meiburg <timeroot.alex@gmail.com>
Co-authored-by: Oliver Sanders <oliver.sanders@metoffice.gov.uk>
Co-authored-by: hansepac <131813389+hansepac@users.noreply.github.com>
Co-authored-by: Simon Li <orpheus+devel@gmail.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Burt Holzman <burt@fnal.gov>
Co-authored-by: Mark <markypizz@gmail.com>
Co-authored-by: Mark Pizzutillo <pizmark@amazon.com>
Co-authored-by: Luciano Resende <lresende@apple.com>
Co-authored-by: Kevin Bates <kbates4@gmail.com>
Co-authored-by: M Bussonnier <bussonniermatthias@gmail.com>
Co-authored-by: Carol Willing <carolcode@willingconsulting.com>
Co-authored-by: Steven Silvester <steve.silvester@mongodb.com>
Co-authored-by: Gonzalo Gasca Meza <gogasca@google.com>
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Latest release is breaking custom ContentManager
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