Simplify CI, fix mybinder.org build, bump python (and other) versions #101
Workflow file for this run
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| name: CI | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: '*' | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install mamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| micromamba-version: '1.5.1-0' | |
| environment-file: .binder/environment.yml | |
| environment-name: jupyterlab-demo | |
| cache-environment: true | |
| - run: | | |
| micromamba info | |
| micromamba list | |
| micromamba config sources | |
| micromamba config list | |
| printenv | sort | |
| - run: | | |
| jupyter nbconvert --to notebook --execute --ExecutePreprocessor.timeout=60 --stdout notebooks/Data.ipynb > /dev/null; | |
| jupyter nbconvert --to notebook --execute --ExecutePreprocessor.timeout=60 --stdout notebooks/Fasta.ipynb > /dev/null; | |
| jupyter nbconvert --to notebook --execute --ExecutePreprocessor.timeout=60 --stdout notebooks/R.ipynb > /dev/null; | |
| python build.py |