Update environment (#142) #81

	name: CI

	on:
	push:
	branches: [ master ]
	pull_request:
	branches: '*'

	defaults:
	run:
	shell: bash -el {0}

	jobs:
	build:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v3
	- name: Cache conda
	uses: actions/cache@v3
	env:
	# Increase this value to reset cache if .binder/environment.yml has not changed
	CACHE_NUMBER: 0
	with:
	path: ~/conda_pkgs_dir
	key:
	${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ hashFiles('.binder/environment.yml') }}
	- uses: conda-incubator/setup-miniconda@v2
	with:
	mamba-version: ">=1.4.0"
	# Defaults is added automatically
	channels: conda-forge
	channel-priority: "strict"
	activate-environment: jupyterlab-demo
	environment-file: .binder/environment.yml
	# The following option is blocking the environment resolution (newer versions are not found)
	# use-only-tar-bz2: true # IMPORTANT: This needs to be set for caching to work properly!
	- run: \|
	conda info
	conda list
	conda config --show-sources
	conda config --show
	printenv \| sort
	- run: \|
	invoke r --env-name=jupyterlab-demo
	jupyter nbconvert --to notebook --execute --ExecutePreprocessor.timeout=60 --stdout notebooks/Data.ipynb > /dev/null;
	jupyter nbconvert --to notebook --execute --ExecutePreprocessor.timeout=60 --stdout notebooks/Fasta.ipynb > /dev/null;
	jupyter nbconvert --to notebook --execute --ExecutePreprocessor.timeout=60 --stdout notebooks/R.ipynb > /dev/null;
	invoke demofiles
	invoke talk -t demo
	jupyter lab workspaces import .binder/workspace.json
	python -m jupyterlab.browser_check
	invoke clean

Provide feedback