Datajoint @ Kavli Documentation

The official Datajoint Documentation on the two core pipelines in use in the Moser Group at the Kavli Institute can be found here. This repository is the source.

Contents

• Usage

  • Getting started with Datajoint
    • Getting Started in Python
    • Getting Started in Matlab
    • Where to find help
    • Nomenclature: terms used in ephys and imaging pipelines
  • Ephys
    • Connecting to the pipeline
    • Ingesting new data via the web GUI
    • Fetching data from the pipeline
  • Imaging
    • Overview
    • Installation
    • Folder logic
    • Adding sessions
    • Helper notebooks
    • Synchronisation
    • FOV Unwarping
    • Desktop screening GUI

• Technical details

  • Pipeline architecture
  • Database server

Notes

Something about the docutils package v0.17.1 breaks bullet pointed lists. Currently pinned to 0.16, review when either 0.17.2 or 0.18 comes out