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RE2022-218: save pre-processed trait info #419

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merged 13 commits into from
Aug 23, 2023
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codecov bot commented Aug 16, 2023

Codecov Report

Patch coverage: 100.00% and project coverage change: +0.07% 🎉

Comparison is base (a8b506d) 41.39% compared to head (ed3e1b4) 41.46%.

Additional details and impacted files
@@            Coverage Diff             @@
##             main     #419      +/-   ##
==========================================
+ Coverage   41.39%   41.46%   +0.07%     
==========================================
  Files          67       67              
  Lines        5489     5496       +7     
==========================================
+ Hits         2272     2279       +7     
  Misses       3217     3217              
Files Changed Coverage Δ
...rc/loaders/genome_collection/parse_tool_results.py 16.54% <ø> (ø)
src/common/product_models/heatmap_common_models.py 100.00% <100.00%> (ø)
src/loaders/common/loader_common_names.py 100.00% <100.00%> (ø)
src/loaders/compute_tools/tool_result_parser.py 34.00% <100.00%> (+4.21%) ⬆️

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@@ -125,13 +125,13 @@
# microtrait_trait-displaynamelong column as the column description, and
# microtrait_trait-value as the cell value
_MICROTRAIT_TO_SYS_TRAIT_MAP = {
loader_common_names.MICROTRAIT_TRAIT_NAME: loader_common_names.SYS_TRAIT_ID,
# loader_common_names.MICROTRAIT_TRAIT_NAME: loader_common_names.SYS_TRAIT_ID,
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commented them out so that tests can pass. Those will be removed in the following PRs.

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LGTM

@Tianhao-Gu Tianhao-Gu merged commit 6cb7b1e into main Aug 23, 2023
@Tianhao-Gu Tianhao-Gu deleted the dev_parse_in_place branch August 23, 2023 02:07
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2 participants