Implement API methods for admin object metadata #337
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| name: KBase Workspace tests | |
| on: | |
| pull_request: | |
| types: | |
| - opened | |
| - reopened | |
| - synchronize | |
| - ready_for_review | |
| push: | |
| # run workflow when merging to main or develop | |
| branches: | |
| - main | |
| - master | |
| - develop | |
| # TODO find out what minio ver we're using in CI / appdev / prod and use that | |
| # TODO split tests into mongo related & non mongo related. Run the former once. | |
| jobs: | |
| workspace_container_tests: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python 3.10 | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: "3.10" | |
| - name: Install dependencies and set up test config | |
| shell: bash | |
| run: | | |
| # set up python dependencies | |
| pip install pytest requests | |
| - name: Run tests | |
| shell: bash | |
| run: | | |
| sh scripts/run_tests.sh | |
| workspace_deluxe_tests: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - java: '11' | |
| mongo: 'mongodb-linux-x86_64-3.6.23' | |
| minio: '2019-05-23T00-29-34Z' | |
| wired_tiger: 'true' | |
| ant_test: 'test_quick_coverage' | |
| # the current production setup | |
| - java: '11' | |
| mongo: 'mongodb-linux-x86_64-3.6.13' | |
| minio: '2019-05-23T00-29-34Z' | |
| wired_tiger: 'false' | |
| ant_test: 'test_quick_coverage' | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up java | |
| uses: actions/setup-java@v3 | |
| with: | |
| distribution: 'temurin' | |
| java-version: ${{matrix.java}} | |
| - name: Set up Python 3.7 # sample service is on 3.7, handle service is on sdkbase2.latest | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: "3.7" | |
| - name: Install dependencies and set up test config | |
| shell: bash | |
| run: | | |
| export HOMEDIR=`pwd` | |
| # set up python dependencies | |
| cd python_dependencies | |
| pip install pipenv | |
| pipenv sync --system | |
| cd .. | |
| # move to parent dir of homedir to install binaries etc | |
| cd .. | |
| # set up jars | |
| git clone https://github.com/kbase/jars | |
| export JARSDIR=$(pwd)/jars/lib/jars/ | |
| # set up arango | |
| export ARANGODB_VER=3.9.1 | |
| export ARANGODB_V=39 | |
| curl -O https://download.arangodb.com/arangodb$ARANGODB_V/Community/Linux/arangodb3-linux-$ARANGODB_VER.tar.gz | |
| tar -xf arangodb3-linux-$ARANGODB_VER.tar.gz | |
| export ARANGO_EXE=$(pwd)/arangodb3-linux-$ARANGODB_VER/bin/arangod | |
| export ARANGO_JS=$(pwd)/arangodb3-linux-$ARANGODB_VER/usr/share/arangodb3/js/ | |
| # set up handle service | |
| export HS_COMMIT=08e18379817e16db920501b66ba62b66598f506c | |
| export LOG_COMMIT=b549c557e3c519e0a55eadf7863a93db25cd6806 | |
| git clone https://github.com/kbase/handle_service2.git | |
| cd handle_service2/ | |
| git checkout $HS_COMMIT | |
| sudo chmod -R 777 . | |
| cd lib/ | |
| mkdir biokbase | |
| cd biokbase/ | |
| wget https://raw.githubusercontent.com/kbase/sdkbase2/$LOG_COMMIT/log.py | |
| cd .. | |
| export HSDIR=`pwd` | |
| cd ../.. | |
| # set up sample service | |
| export SAMPLE_COMMIT=6813fb148e95db2b11db6eea04f4d1d45cbb7119 | |
| git clone https://github.com/kbase/sample_service.git | |
| cd sample_service | |
| git checkout $SAMPLE_COMMIT | |
| cd lib | |
| export SAMPLE_DIR=`pwd` | |
| cd ../.. | |
| # set up blobstore | |
| wget -q -O blobstore https://github.com/kbase/blobstore/releases/download/v0.1.2/blobstore_linux_amd64 | |
| chmod a+x blobstore | |
| export BLOBEXE=$(pwd)/blobstore | |
| # set up mongo | |
| wget -q http://fastdl.mongodb.org/linux/${{matrix.mongo}}.tgz | |
| tar xfz ${{matrix.mongo}}.tgz | |
| export MONGOD=`pwd`/${{matrix.mongo}}/bin/mongod | |
| # set up minio | |
| export MINIO=$HOMEDIR/test_dependencies/minio/${{matrix.minio}}/minio | |
| gunzip $MINIO.gz | |
| chmod a+x $MINIO | |
| # set up test config | |
| cd $HOMEDIR | |
| cp -n test.cfg.example test.cfg | |
| sed -i "s#^test.temp.dir =.*#test.temp.dir=temp_test_dir#" test.cfg | |
| sed -i "s#^test.mongo.exe.*#test.mongo.exe=$MONGOD#" test.cfg | |
| sed -i "s#^test.minio.exe.*#test.minio.exe=$MINIO#" test.cfg | |
| sed -i "s#^test.mongo.useWiredTiger.*#test.mongo.useWiredTiger=${{matrix.wired_tiger}}#" test.cfg | |
| sed -i "s#^test.jars.dir.*#test.jars.dir=$JARSDIR#" test.cfg | |
| sed -i "s#^test.blobstore.exe.*#test.blobstore.exe=$BLOBEXE#" test.cfg | |
| sed -i "s#^test.handleservice.dir.*#test.handleservice.dir=$HSDIR#" test.cfg | |
| sed -i "s#^test.sampleservice.dir.*#test.sampleservice.dir=$SAMPLE_DIR#" test.cfg | |
| sed -i "s#^test.arango.exe.*#test.arango.exe=$ARANGO_EXE#" test.cfg | |
| sed -i "s#^test.arango.js.*#test.arango.js=$ARANGO_JS#" test.cfg | |
| cat test.cfg | |
| - name: Run tests | |
| shell: bash | |
| run: | | |
| ant javadoc | |
| ant ${{matrix.ant_test}} | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| fail_ci_if_error: true |