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Updated macos M1 to workflow
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@kcleal
kcleal committed Jul 17, 2024
1 parent bdc75f2 commit c33b0fd
Showing 1 changed file with 127 additions and 119 deletions.
246 changes: 127 additions & 119 deletions .github/workflows/main.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -8,38 +8,38 @@ env:
version: 0.10.1

jobs:
mingw:
strategy:
fail-fast: false
matrix:
sys: [ucrt64] # clang64,
name: ${{ matrix.sys }}
runs-on: windows-latest
defaults:
run:
shell: msys2 {0}
steps:
- uses: actions/checkout@v3
- uses: msys2/setup-msys2@v2
with:
msystem: ${{ matrix.sys }}
update: true
install: make
pacboy: toolchain:p glfw:p skia:p htslib:p freeglut:p glew:p ncurses:p fontconfig:p dlfcn:p libpng:p
- name: build
run: |
make
- name: upload
uses: actions/upload-artifact@v3
with:
name: mingw-${{ matrix.sys }}
path: ${{ github.workspace }}/*.exe
# mingw:
# strategy:
# fail-fast: false
# matrix:
# sys: [ucrt64] # clang64,
# name: ${{ matrix.sys }}
# runs-on: windows-latest
# defaults:
# run:
# shell: msys2 {0}
# steps:
# - uses: actions/checkout@v3
# - uses: msys2/setup-msys2@v2
# with:
# msystem: ${{ matrix.sys }}
# update: true
# install: make
# pacboy: toolchain:p glfw:p skia:p htslib:p freeglut:p glew:p ncurses:p fontconfig:p dlfcn:p libpng:p
# - name: build
# run: |
# make
# - name: upload
# uses: actions/upload-artifact@v3
# with:
# name: mingw-${{ matrix.sys }}
# path: ${{ github.workspace }}/*.exe

macos-package:
runs-on: ${{ matrix.os }}
strategy:
matrix:
os: [ macos-12, macos-14 ]
os: [ macos-14 ] # macos-12,
include:
- os: macos-12
arch: intel
Expand Down Expand Up @@ -70,24 +70,32 @@ jobs:
npm install --global create-dmg
- name: Build and install libdeflate
run: |
git clone --depth 1 https://github.com/ebiggers/libdeflate.git
cd libdeflate && CFLAGS+=' -fPIC -O3 ' cmake -B build && CFLAGS+=' -fPIC -O3 ' cmake --build build
sudo cp build/libdeflate.a /usr/local/lib
sudo cp libdeflate.h /usr/local/include
- name: Build and install htslib
run: |
wget -O htslib.tar.bz2 https://github.com/samtools/htslib/releases/download/1.18/htslib-1.18.tar.bz2
tar -xvf htslib.tar.bz2 && mv htslib-* htslib && rm htslib.tar.bz2
cd htslib
LDFLAGS="-L/usr/local/lib" CPPFLAGS="-I/usr/local/include" ./configure --enable-libcurl --enable-s3 --enable-lzma --enable-bz2 --with-libdeflate
make
sudo make install
- name: Make Prep
run: make prep
run: |
make prep
- name: package
run: |
osacompile -o gw.app deps/gw_applescript_prog.txt
cp deps/gw_droplet.icns gw.app/Contents/Resources/droplet.icns
git clone --depth 1 https://github.com/ebiggers/libdeflate.git
cd libdeflate && CFLAGS+=' -fPIC -O3 ' cmake -B build && CFLAGS+=' -fPIC -O3 ' cmake --build build
sudo cp build/libdeflate.a /usr/local/lib && sudo cp libdeflate.h /usr/local/include && cd ../
wget -O htslib.tar.bz2 https://github.com/samtools/htslib/releases/download/1.18/htslib-1.18.tar.bz2
tar -xvf htslib.tar.bz2 && mv htslib-* htslib && rm htslib.tar.bz2 && cd htslib
./configure --enable-libcurl --enable-s3 --enable-lzma --enable-bz2 --with-libdeflate
make && sudo make install && cd ../
echo "BUILDING GW"
make
mv gw ./gw.app/Contents/MacOS
Expand Down Expand Up @@ -118,85 +126,85 @@ jobs:
name: gw_macos_${{ matrix.arch }}
path: ./*.dmg

deb-package:
runs-on: ubuntu-22.04
steps:
- uses: actions/checkout@v3
- name: Install dependencies
run: |
sudo apt update
sudo apt-get install dh-make build-essential debhelper dh-virtualenv
sudo apt-get install debugedit devscripts fakeroot debootstrap pbuilder autotools-dev
sudo apt install zlib1g-dev libbz2-dev liblzma-dev libncurses5-dev libncursesw5-dev libssl-dev
sudo apt install libgl1-mesa-dev libfontconfig-dev libcurl4-openssl-dev libglfw3 libglfw3-dev
- name: build
run: |
BUILD_DIR=$(pwd)
mkdir -p usr/bin
mkdir -p usr/lib/x86_64-linux-gnu
mkdir -p usr/lib/gwhts
mkdir -p usr/include/gwhts
mkdir -p usr/share/icons
mkdir -p usr/share/icons/hicolor/512x512/apps/
mkdir -p usr/share/applications
sudo mkdir -p /usr/lib/gwhts
sudo mkdir -p /usr/include/gwhts/htslib
sudo cp /usr/lib/x86_64-linux-gnu/libglfw* usr/lib/x86_64-linux-gnu/.
git clone --depth 1 https://github.com/ebiggers/libdeflate.git
cd libdeflate && CFLAGS+=' -fPIC -O3 ' cmake -B build && CFLAGS+=' -fPIC -O3 ' cmake --build build
sudo cp build/libdeflate.a /usr/local/lib && sudo cp libdeflate.h /usr/local/include
echo "LIBDEFLATE BUILT" && pwd
cd ${BUILD_DIR}
wget -O htslib.tar.bz2 https://github.com/samtools/htslib/releases/download/1.20/htslib-1.20.tar.bz2
tar -xvf htslib.tar.bz2
mv htslib-1.20 htslib && rm htslib.tar.bz2 && cd htslib
sed -i 's/ -g -Wall/ -Wall/' Makefile # strip debug information
./configure --enable-libcurl --enable-s3 --enable-lzma --enable-bz2 --with-libdeflate
make -j3
echo "HTSLIB BUILT" && pwd
cp -rf htslib ../include
sudo cp libhts.* /usr/lib/gwhts
sudo cp htslib/*.h /usr/include/gwhts/htslib
cp libhts.* ${BUILD_DIR}/usr/lib/gwhts
cd ${BUILD_DIR}
sed -i '133 i \\t-mv gw usr/bin' Makefile
sed -i 's@-L/usr/local/lib@-L/usr/local/lib -L/usr/lib/gwhts@g' Makefile
make prep
cp include/gw_icon.png usr/share/icons/
cp include/gw_icon.png usr/share/icons/hicolor/512x512/apps/
cp deps/gw.desktop usr/share/applications/
- name: package
run: |
dh_make --single --createorig --packagename gw_${version} --email clealk@cardiff.ac.uk --yes --native
printf "usr/bin/gw\nusr/share/icons/gw_icon.png\nusr/share/applications/gw.desktop\nusr/lib/gwhts/\nusr/lib/x86_64-linux-gnu/libglfw.so.3\nusr/lib/x86_64-linux-gnu/libglfw.so.3.3" > debian/install
export LDFLAGS="$LDFLAGS -L./lib/skia/out/Release-x64 -L/usr/local/lib -L/usr/lib -L./usr/lib/gwhts -Wl,-rpath,'$ORIGIN/../lib/gwhts'"
sed -i '/^Section/c\Section: Bioinformatics' debian/control
sed -i '/^Homepage/c\Homepage: https://github.com/kcleal/gw' debian/control
sed -i '/^Description/c\Description: Genome browser and variant annotation' debian/control
sed -i '/<insert long/d' debian/control
printf "Conflicts: libglfw3 (<< 3.3)\nReplaces: libglfw3\n" >> debian/control
# Override dh_shlibdeps to include /usr/lib/gwhts
printf '#!/usr/bin/make -f\n%%:\n\tdh $@\n\nclean:\n\tdh_clean\n\noverride_dh_shlibdeps:\n\tdh_shlibdeps -l/usr/lib/gwhts\n' > debian/rules
chmod +x debian/rules
dpkg-buildpackage -us -uc
- name: upload
uses: actions/upload-artifact@v3
with:
name: debian-package
path: /home/runner/work/gw/*.deb
# deb-package:
# runs-on: ubuntu-22.04
# steps:
# - uses: actions/checkout@v3
# - name: Install dependencies
# run: |
# sudo apt update
# sudo apt-get install dh-make build-essential debhelper dh-virtualenv
# sudo apt-get install debugedit devscripts fakeroot debootstrap pbuilder autotools-dev
# sudo apt install zlib1g-dev libbz2-dev liblzma-dev libncurses5-dev libncursesw5-dev libssl-dev
# sudo apt install libgl1-mesa-dev libfontconfig-dev libcurl4-openssl-dev libglfw3 libglfw3-dev
# - name: build
# run: |
#
# BUILD_DIR=$(pwd)
#
# mkdir -p usr/bin
# mkdir -p usr/lib/x86_64-linux-gnu
# mkdir -p usr/lib/gwhts
# mkdir -p usr/include/gwhts
# mkdir -p usr/share/icons
# mkdir -p usr/share/icons/hicolor/512x512/apps/
# mkdir -p usr/share/applications
#
# sudo mkdir -p /usr/lib/gwhts
# sudo mkdir -p /usr/include/gwhts/htslib
# sudo cp /usr/lib/x86_64-linux-gnu/libglfw* usr/lib/x86_64-linux-gnu/.
#
# git clone --depth 1 https://github.com/ebiggers/libdeflate.git
# cd libdeflate && CFLAGS+=' -fPIC -O3 ' cmake -B build && CFLAGS+=' -fPIC -O3 ' cmake --build build
# sudo cp build/libdeflate.a /usr/local/lib && sudo cp libdeflate.h /usr/local/include
# echo "LIBDEFLATE BUILT" && pwd
# cd ${BUILD_DIR}
#
# wget -O htslib.tar.bz2 https://github.com/samtools/htslib/releases/download/1.20/htslib-1.20.tar.bz2
# tar -xvf htslib.tar.bz2
# mv htslib-1.20 htslib && rm htslib.tar.bz2 && cd htslib
# sed -i 's/ -g -Wall/ -Wall/' Makefile # strip debug information
# ./configure --enable-libcurl --enable-s3 --enable-lzma --enable-bz2 --with-libdeflate
# make -j3
# echo "HTSLIB BUILT" && pwd
# cp -rf htslib ../include
# sudo cp libhts.* /usr/lib/gwhts
# sudo cp htslib/*.h /usr/include/gwhts/htslib
# cp libhts.* ${BUILD_DIR}/usr/lib/gwhts
#
# cd ${BUILD_DIR}
#
# sed -i '133 i \\t-mv gw usr/bin' Makefile
# sed -i 's@-L/usr/local/lib@-L/usr/local/lib -L/usr/lib/gwhts@g' Makefile
#
# make prep
#
# cp include/gw_icon.png usr/share/icons/
# cp include/gw_icon.png usr/share/icons/hicolor/512x512/apps/
# cp deps/gw.desktop usr/share/applications/
#
# - name: package
# run: |
# dh_make --single --createorig --packagename gw_${version} --email clealk@cardiff.ac.uk --yes --native
#
# printf "usr/bin/gw\nusr/share/icons/gw_icon.png\nusr/share/applications/gw.desktop\nusr/lib/gwhts/\nusr/lib/x86_64-linux-gnu/libglfw.so.3\nusr/lib/x86_64-linux-gnu/libglfw.so.3.3" > debian/install
#
# export LDFLAGS="$LDFLAGS -L./lib/skia/out/Release-x64 -L/usr/local/lib -L/usr/lib -L./usr/lib/gwhts -Wl,-rpath,'$ORIGIN/../lib/gwhts'"
#
# sed -i '/^Section/c\Section: Bioinformatics' debian/control
# sed -i '/^Homepage/c\Homepage: https://github.com/kcleal/gw' debian/control
# sed -i '/^Description/c\Description: Genome browser and variant annotation' debian/control
# sed -i '/<insert long/d' debian/control
# printf "Conflicts: libglfw3 (<< 3.3)\nReplaces: libglfw3\n" >> debian/control
#
# # Override dh_shlibdeps to include /usr/lib/gwhts
# printf '#!/usr/bin/make -f\n%%:\n\tdh $@\n\nclean:\n\tdh_clean\n\noverride_dh_shlibdeps:\n\tdh_shlibdeps -l/usr/lib/gwhts\n' > debian/rules
# chmod +x debian/rules
#
# dpkg-buildpackage -us -uc
#
# - name: upload
# uses: actions/upload-artifact@v3
# with:
# name: debian-package
# path: /home/runner/work/gw/*.deb

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