Mongodb docker container issue on WSL

[JenySadadia]

Issue :

Received below error when tried to start mongo db container on WSL.

Starting kernelci-db ... done
Attaching to kernelci-db
kernelci-db | {"t":{"$date":"2021-12-06T10:54:24.100+00:00"},"s":"I",  "c":"NETWORK",  "id":4915701, "ctx":"-","msg":"Initialized wire specification","attr":{"spec":{"incomingExternalClient":{"minWireVersion":0,"maxWireVersion":13},"incomingInternalClient":{"minWireVersion":0,"maxWireVersion":13},"outgoing":{"minWireVersion":0,"maxWireVersion":13},"isInternalClient":true}}}
kernelci-db | {"t":{"$date":"2021-12-06T10:54:24.100+00:00"},"s":"I",  "c":"CONTROL",  "id":23285,   "ctx":"main","msg":"Automatically disabling TLS 1.0, to force-enable TLS 1.0 specify --sslDisabledProtocols 'none'"}
kernelci-db | {"t":{"$date":"2021-12-06T10:54:24.100+00:00"},"s":"W",  "c":"ASIO",     "id":22601,   "ctx":"main","msg":"No TransportLayer configured during NetworkInterface startup"}
kernelci-db | {"t":{"$date":"2021-12-06T10:54:24.100+00:00"},"s":"I",  "c":"NETWORK",  "id":4648601, "ctx":"main","msg":"Implicit TCP FastOpen unavailable. If TCP FastOpen is required, set tcpFastOpenServer, tcpFastOpenClient, and tcpFastOpenQueueSize."}
kernelci-db | {"t":{"$date":"2021-12-06T10:54:24.101+00:00"},"s":"W",  "c":"ASIO",     "id":22601,   "ctx":"main","msg":"No TransportLayer configured during NetworkInterface startup"}
kernelci-db | {"t":{"$date":"2021-12-06T10:54:24.101+00:00"},"s":"I",  "c":"REPL",     "id":5123008, "ctx":"main","msg":"Successfully registered PrimaryOnlyService","attr":{"service":"TenantMigrationDonorService","ns":"config.tenantMigrationDonors"}}
kernelci-db | {"t":{"$date":"2021-12-06T10:54:24.101+00:00"},"s":"I",  "c":"REPL",     "id":5123008, "ctx":"main","msg":"Successfully registered PrimaryOnlyService","attr":{"service":"TenantMigrationRecipientService","ns":"config.tenantMigrationRecipients"}}
kernelci-db | {"t":{"$date":"2021-12-06T10:54:24.102+00:00"},"s":"I",  "c":"CONTROL",  "id":4615611, "ctx":"initandlisten","msg":"MongoDB starting","attr":{"pid":1,"port":27017,"dbPath":"/data/db","architecture":"64-bit","host":"5d485e17418e"}}
kernelci-db | {"t":{"$date":"2021-12-06T10:54:24.102+00:00"},"s":"I",  "c":"CONTROL",  "id":23403,   "ctx":"initandlisten","msg":"Build Info","attr":{"buildInfo":{"version":"5.0.3","gitVersion":"657fea5a61a74d7a79df7aff8e4bcf0bc742b748","openSSLVersion":"OpenSSL 1.1.1f  31 Mar 2020","modules":[],"allocator":"tcmalloc","environment":{"distmod":"ubuntu2004","distarch":"x86_64","target_arch":"x86_64"}}}}
kernelci-db | {"t":{"$date":"2021-12-06T10:54:24.102+00:00"},"s":"I",  "c":"CONTROL",  "id":51765,   "ctx":"initandlisten","msg":"Operating System","attr":{"os":{"name":"Ubuntu","version":"20.04"}}}
kernelci-db | {"t":{"$date":"2021-12-06T10:54:24.102+00:00"},"s":"I",  "c":"CONTROL",  "id":21951,   "ctx":"initandlisten","msg":"Options set by command line","attr":{"options":{"net":{"bindIp":"*"}}}}
kernelci-db | {"t":{"$date":"2021-12-06T10:54:24.105+00:00"},"s":"I",  "c":"STORAGE",  "id":22315,   "ctx":"initandlisten","msg":"Opening WiredTiger","attr":{"config":"create,cache_size=2519M,session_max=33000,eviction=(threads_min=4,threads_max=4),config_base=false,statistics=(fast),log=(enabled=true,archive=true,path=journal,compressor=snappy),builtin_extension_config=(zstd=(compression_level=6)),file_manager=(close_idle_time=600,close_scan_interval=10,close_handle_minimum=250),statistics_log=(wait=0),verbose=[recovery_progress,checkpoint_progress,compact_progress],"}}
kernelci-db | {"t":{"$date":"2021-12-06T10:54:24.593+00:00"},"s":"E",  "c":"STORAGE",  "id":22435,   "ctx":"initandlisten","msg":"WiredTiger error","attr":{"error":17,"message":"[1638788064:593591][1:0x7f1b881e4c80], connection: __posix_open_file, 805: /data/db/WiredTiger.wt: handle-open: open: File exists"}}
kernelci-db | {"t":{"$date":"2021-12-06T10:54:24.602+00:00"},"s":"I",  "c":"STORAGE",  "id":22430,   "ctx":"initandlisten","msg":"WiredTiger message","attr":{"message":"unexpected file WiredTiger.wt found, renamed to WiredTiger.wt.24"}}
kernelci-db | {"t":{"$date":"2021-12-06T10:54:24.603+00:00"},"s":"E",  "c":"STORAGE",  "id":22435,   "ctx":"initandlisten","msg":"WiredTiger error","attr":{"error":1,"message":"[1638788064:603798][1:0x7f1b881e4c80], connection: __posix_open_file, 805: /data/db/WiredTiger.wt: handle-open: open: Operation not permitted"}}
kernelci-db | {"t":{"$date":"2021-12-06T10:54:24.618+00:00"},"s":"E",  "c":"STORAGE",  "id":22435,   "ctx":"initandlisten","msg":"WiredTiger error","attr":{"error":17,"message":"[1638788064:618150][1:0x7f1b881e4c80], connection: __posix_open_file, 805: /data/db/WiredTiger.wt: handle-open: open: File exists"}}
kernelci-db | {"t":{"$date":"2021-12-06T10:54:24.627+00:00"},"s":"I",  "c":"STORAGE",  "id":22430,   "ctx":"initandlisten","msg":"WiredTiger message","attr":{"message":"unexpected file WiredTiger.wt found, renamed to WiredTiger.wt.25"}}
kernelci-db | {"t":{"$date":"2021-12-06T10:54:24.628+00:00"},"s":"E",  "c":"STORAGE",  "id":22435,   "ctx":"initandlisten","msg":"WiredTiger error","attr":{"error":1,"message":"[1638788064:628488][1:0x7f1b881e4c80], connection: __posix_open_file, 805: /data/db/WiredTiger.wt: handle-open: open: Operation not permitted"}}
kernelci-db | {"t":{"$date":"2021-12-06T10:54:24.641+00:00"},"s":"E",  "c":"STORAGE",  "id":22435,   "ctx":"initandlisten","msg":"WiredTiger error","attr":{"error":17,"message":"[1638788064:641047][1:0x7f1b881e4c80], connection: __posix_open_file, 805: /data/db/WiredTiger.wt: handle-open: open: File exists"}}
kernelci-db | {"t":{"$date":"2021-12-06T10:54:24.650+00:00"},"s":"I",  "c":"STORAGE",  "id":22430,   "ctx":"initandlisten","msg":"WiredTiger message","attr":{"message":"unexpected file WiredTiger.wt found, renamed to WiredTiger.wt.26"}}
kernelci-db | {"t":{"$date":"2021-12-06T10:54:24.651+00:00"},"s":"E",  "c":"STORAGE",  "id":22435,   "ctx":"initandlisten","msg":"WiredTiger error","attr":{"error":1,"message":"[1638788064:651161][1:0x7f1b881e4c80], connection: __posix_open_file, 805: /data/db/WiredTiger.wt: handle-open: open: Operation not permitted"}}
kernelci-db | {"t":{"$date":"2021-12-06T10:54:24.652+00:00"},"s":"W",  "c":"STORAGE",  "id":22347,   "ctx":"initandlisten","msg":"Failed to start up WiredTiger under any compatibility version. This may be due to an unsupported upgrade or downgrade."}
kernelci-db | {"t":{"$date":"2021-12-06T10:54:24.652+00:00"},"s":"F",  "c":"STORAGE",  "id":28595,   "ctx":"initandlisten","msg":"Terminating.","attr":{"reason":"1: Operation not permitted"}}
kernelci-db | {"t":{"$date":"2021-12-06T10:54:24.652+00:00"},"s":"F",  "c":"-",        "id":23091,   "ctx":"initandlisten","msg":"Fatal assertion","attr":{"msgid":28595,"file":"src/mongo/db/storage/wiredtiger/wiredtiger_kv_engine.cpp","line":690}}
kernelci-db | {"t":{"$date":"2021-12-06T10:54:24.652+00:00"},"s":"F",  "c":"-",        "id":23092,   "ctx":"initandlisten","msg":"\n\n***aborting after fassert() failure\n\n"}
kernelci-db exited with code 14

Root cause:
As per the answer of mongodb github issue #docker-library/mongo#232 (comment) , We can not use shared memory for mongodb docker container and WSL uses VM to host the Docker daemon.

Solution:
We need to create a separate docker volume to build mongodb container.

Below is the docker-compose.yaml which can be used to build db container successfully:

version: '3'
services:

  db:
    container_name: 'kernelci-db'
    image: 'mongo:5.0'
    volumes:
      - mongodata:/data/db

volumes:
  mongodata:

Refernce URLs:

https://stackoverflow.com/questions/54911021/unable-to-start-docker-mongo-image-on-windows
docker-library/mongo#74

[JenySadadia]

Hi @gctucker,
I have initiated PR #45 for this.