try another micromamba env resolved inside the biocdevel container

inst/envs/Linux_x86_64.yaml

@@ -1,92 +1,58 @@
-name: scvelo
+name: scvelo_032
 channels:
 - conda-forge
 dependencies:
 - _libgcc_mutex=0.1=conda_forge
 - _openmp_mutex=4.5=2_gnu
 - absl-py=2.1.0=pyhd8ed1ab_0
 - anndata=0.10.8=pyhd8ed1ab_0
-- annotated-types=0.7.0=pyhd8ed1ab_0
-- anyio=4.4.0=pyhd8ed1ab_0
 - aom=3.9.1=hac33072_0
 - array-api-compat=1.8=pyhd8ed1ab_0
-- arrow=1.3.0=pyhd8ed1ab_0
-- backoff=2.2.1=pyhd8ed1ab_0
-- beautifulsoup4=4.12.3=pyha770c72_0
-- blessed=1.19.1=pyhe4f9e05_2
 - blosc=1.21.6=hef167b5_0
-- boto3=1.35.3=pyhd8ed1ab_0
-- botocore=1.35.3=pyge310_1234567_0
 - brotli=1.1.0=hd590300_1
 - brotli-bin=1.1.0=hd590300_1
 - brotli-python=1.1.0=py311hb755f60_1
 - bzip2=1.0.8=h4bc722e_7
-- c-ares=1.33.0=ha66036c_0
+- c-ares=1.33.1=heb4867d_0
 - ca-certificates=2024.7.4=hbcca054_0
-- cachecontrol=0.14.0=pyhd8ed1ab_1
-- cachecontrol-with-filecache=0.14.0=pyhd8ed1ab_1
 - cached-property=1.5.2=hd8ed1ab_1
 - cached_property=1.5.2=pyha770c72_1
 - certifi=2024.7.4=pyhd8ed1ab_0
 - cffi=1.17.0=py311ha8e6434_0
 - charset-normalizer=3.3.2=pyhd8ed1ab_0
 - chex=0.1.86=pyhd8ed1ab_0
-- cleo=2.1.0=pyhd8ed1ab_0
 - click=8.1.7=unix_pyh707e725_0
 - colorama=0.4.6=pyhd8ed1ab_0
 - contextlib2=21.6.0=pyhd8ed1ab_0
 - contourpy=1.2.1=py311h9547e67_0
-- crashtest=0.4.1=pyhd8ed1ab_0
-- croniter=1.4.1=pyhd8ed1ab_0
-- cryptography=43.0.0=py311hc6616f6_0
 - cycler=0.12.1=pyhd8ed1ab_0
-- dateutils=0.6.12=py_0
 - dav1d=1.2.1=hd590300_0
-- dbus=1.13.6=h5008d03_3
-- deepdiff=7.0.1=pyhd8ed1ab_0
-- distlib=0.3.8=pyhd8ed1ab_0
-- dnspython=2.6.1=pyhd8ed1ab_1
 - docrep=0.3.2=pyh44b312d_0
-- dulwich=0.21.7=py311h459d7ec_0
-- email-validator=2.2.0=pyhd8ed1ab_0
-- email_validator=2.2.0=hd8ed1ab_0
 - et_xmlfile=1.1.0=pyhd8ed1ab_0
 - etils=1.9.2=pyhd8ed1ab_0
 - exceptiongroup=1.2.2=pyhd8ed1ab_0
-- expat=2.6.2=h59595ed_0
-- fastapi=0.112.1=pyhd8ed1ab_0
-- fastapi-cli=0.0.5=pyhd8ed1ab_0
 - filelock=3.15.4=pyhd8ed1ab_0
-- flax=0.8.5=pyhd8ed1ab_0
+- flax=0.9.0=pyhd8ed1ab_0
 - fonttools=4.53.1=py311h61187de_0
 - freetype=2.12.1=h267a509_2
 - fsspec=2024.6.1=pyhff2d567_0
 - get-annotations=0.1.2=pyhd8ed1ab_0
 - gmp=6.3.0=hac33072_2
 - gmpy2=2.1.5=py311hc4f1f91_1
-- h11=0.14.0=pyhd8ed1ab_0
 - h2=4.1.0=pyhd8ed1ab_0
 - h5py=3.11.0=nompi_py311h439e445_102
 - hdf5=1.14.3=nompi_hdf9ad27_105
 - hpack=4.0.0=pyh9f0ad1d_0
-- httpcore=1.0.5=pyhd8ed1ab_0
-- httpx=0.27.0=pyhd8ed1ab_0
 - hyperframe=6.0.1=pyhd8ed1ab_0
 - icu=75.1=he02047a_0
-- idna=3.7=pyhd8ed1ab_0
+- idna=3.8=pyhd8ed1ab_0
 - importlib-metadata=8.4.0=pyha770c72_0
 - importlib_metadata=8.4.0=hd8ed1ab_0
 - importlib_resources=6.4.4=pyhd8ed1ab_0
-- inquirer=3.1.4=pyhd8ed1ab_0
-- itsdangerous=2.2.0=pyhd8ed1ab_0
-- jaraco.classes=3.4.0=pyhd8ed1ab_1
 - jax=0.4.31=pyhd8ed1ab_0
 - jaxlib=0.4.31=cpu_py311hb2c720c_0
-- jeepney=0.8.0=pyhd8ed1ab_0
 - jinja2=3.1.4=pyhd8ed1ab_0
-- jmespath=1.0.1=pyhd8ed1ab_0
 - joblib=1.4.2=pyhd8ed1ab_0
-- keyring=24.3.1=py311h38be061_0
 - keyutils=1.6.1=h166bdaf_0
 - kiwisolver=1.4.5=py311h9547e67_1
 - krb5=1.21.3=h659f571_0
@@ -96,7 +62,7 @@ dependencies:
 - lerc=4.0.0=h27087fc_0
 - libabseil=20240116.2=cxx17_he02047a_1
 - libaec=1.1.3=h59595ed_0
-- libavif16=1.1.1=h9b56c87_0
+- libavif16=1.1.1=h104a339_1
 - libblas=3.9.0=23_linux64_openblas
 - libbrotlicommon=1.1.0=hd590300_1
 - libbrotlidec=1.1.0=hd590300_1
@@ -108,11 +74,12 @@ dependencies:
 - libev=4.33=hd590300_2
 - libexpat=2.6.2=h59595ed_0
 - libffi=3.4.2=h7f98852_5
-- libgcc-ng=14.1.0=h77fa898_0
-- libgfortran-ng=14.1.0=h69a702a_0
-- libgfortran5=14.1.0=hc5f4f2c_0
-- libglib=2.80.3=h315aac3_2
-- libgomp=14.1.0=h77fa898_0
+- libgcc=14.1.0=h77fa898_1
+- libgcc-ng=14.1.0=h69a702a_1
+- libgfortran=14.1.0=h69a702a_1
+- libgfortran-ng=14.1.0=h69a702a_1
+- libgfortran5=14.1.0=hc5f4f2c_1
+- libgomp=14.1.0=h77fa898_1
 - libgrpc=1.62.2=h15f2491_0
 - libhwloc=2.11.1=default_hecaa2ac_1000
 - libiconv=1.17=hd590300_2
@@ -127,18 +94,18 @@ dependencies:
 - libre2-11=2023.09.01=h5a48ba9_2
 - libsqlite=3.46.0=hde9e2c9_0
 - libssh2=1.11.0=h0841786_0
-- libstdcxx-ng=14.1.0=hc0a3c3a_0
+- libstdcxx=14.1.0=hc0a3c3a_1
+- libstdcxx-ng=14.1.0=h4852527_1
 - libtiff=4.6.0=h46a8edc_4
-- libtorch=2.3.1=cpu_generic_h970db74_0
+- libtorch=2.4.0=cpu_generic_h4a3044c_1
 - libuuid=2.38.1=h0b41bf4_0
 - libuv=1.48.0=hd590300_0
 - libwebp-base=1.4.0=hd590300_0
-- libxcb=1.16=hd590300_0
+- libxcb=1.16=hb9d3cd8_1
 - libxcrypt=4.4.36=hd590300_1
 - libxml2=2.12.7=he7c6b58_4
 - libzlib=1.3.1=h4ab18f5_1
-- lightning=2.0.9.post0=pyhd8ed1ab_0
-- lightning-cloud=0.5.70=pyhd8ed1ab_0
+- lightning=2.4.0=pyhd8ed1ab_0
 - lightning-utilities=0.11.6=pyhd8ed1ab_0
 - llvmlite=0.43.0=py311hbde99c3_0
 - loompy=3.0.6=py_0
@@ -149,7 +116,6 @@ dependencies:
 - mdurl=0.1.2=pyhd8ed1ab_0
 - ml-collections=0.1.1=pyhd8ed1ab_0
 - ml_dtypes=0.4.0=py311h14de704_1
-- more-itertools=10.4.0=pyhd8ed1ab_0
 - mpc=1.3.1=hfe3b2da_0
 - mpfr=4.2.1=h38ae2d0_2
 - mpmath=1.3.0=pyhd8ed1ab_0
@@ -158,7 +124,7 @@ dependencies:
 - multipledispatch=0.6.0=pyhd8ed1ab_1
 - munkres=1.1.4=pyh9f0ad1d_0
 - natsort=8.4.0=pyhd8ed1ab_0
-- ncurses=6.5=h59595ed_0
+- ncurses=6.5=he02047a_1
 - nest-asyncio=1.6.0=pyhd8ed1ab_0
 - networkx=3.3=pyhd8ed1ab_1
 - nomkl=1.0=h5ca1d4c_0
@@ -168,119 +134,76 @@ dependencies:
 - numpyro=0.15.2=pyhd8ed1ab_0
 - openjpeg=2.5.2=h488ebb8_0
 - openpyxl=3.1.5=py311h459d7ec_0
-- openssl=3.3.1=h4bc722e_2
+- openssl=3.3.1=hb9d3cd8_3
 - opt-einsum=3.3.0=hd8ed1ab_2
 - opt_einsum=3.3.0=pyhc1e730c_2
 - optax=0.2.2=pyhd8ed1ab_1
 - orbax-checkpoint=0.4.4=pyhd8ed1ab_0
-- ordered-set=4.1.0=pyhd8ed1ab_0
-- orjson=3.10.7=py311hb3a8bbb_0
 - packaging=24.1=pyhd8ed1ab_0
 - pandas=2.2.2=py311h14de704_1
 - patsy=0.5.6=pyhd8ed1ab_0
-- pcre2=10.44=hba22ea6_2
-- pexpect=4.9.0=pyhd8ed1ab_0
 - pillow=10.4.0=py311h82a398c_0
 - pip=24.2=pyhd8ed1ab_0
-- pkginfo=1.11.1=pyhd8ed1ab_0
-- platformdirs=4.2.2=pyhd8ed1ab_0
-- poetry=1.8.3=linux_pyha804496_1
-- poetry-core=1.9.0=pyhd8ed1ab_0
-- poetry-plugin-export=1.8.0=pyhd8ed1ab_0
 - protobuf=4.25.3=py311h7b78aeb_0
-- psutil=6.0.0=py311h331c9d8_0
 - pthread-stubs=0.4=h36c2ea0_1001
-- ptyprocess=0.7.0=pyhd3deb0d_0
 - pybind11-abi=4=hd8ed1ab_3
 - pycparser=2.22=pyhd8ed1ab_0
-- pydantic=2.1.1=pyhd8ed1ab_0
-- pydantic-core=2.4.0=py311h46250e7_0
 - pygments=2.18.0=pyhd8ed1ab_0
-- pyjwt=2.9.0=pyhd8ed1ab_1
 - pynndescent=0.5.13=pyhff2d567_0
-- pyparsing=3.1.2=pyhd8ed1ab_0
-- pyproject_hooks=1.1.0=pyhd8ed1ab_0
+- pyparsing=3.1.4=pyhd8ed1ab_0
 - pyro-api=0.1.2=pyhd8ed1ab_0
 - pyro-ppl=1.9.1=pyhd8ed1ab_0
 - pysocks=1.7.1=pyha2e5f31_6
 - python=3.11.9=hb806964_0_cpython
-- python-build=1.2.1=pyhd8ed1ab_0
 - python-dateutil=2.9.0=pyhd8ed1ab_0
-- python-editor=1.0.4=pyhd8ed1ab_1
-- python-fastjsonschema=2.20.0=pyhd8ed1ab_0
-- python-installer=0.7.0=pyhd8ed1ab_0
-- python-multipart=0.0.9=pyhd8ed1ab_0
 - python-tzdata=2024.1=pyhd8ed1ab_0
 - python_abi=3.11=5_cp311
-- pytorch=2.3.1=cpu_generic_py311h8ca351a_0
+- pytorch=2.4.0=cpu_generic_py311h7a8ff39_1
 - pytorch-lightning=2.4.0=pyhd8ed1ab_0
 - pytz=2024.1=pyhd8ed1ab_0
 - pyyaml=6.0.2=py311h61187de_0
 - qhull=2020.2=h434a139_5
-- rapidfuzz=3.9.6=py311hf86e51f_0
 - rav1e=0.6.6=he8a937b_2
 - re2=2023.09.01=h7f4b329_2
-- readchar=4.2.0=pyhd8ed1ab_0
 - readline=8.2=h8228510_1
 - requests=2.32.3=pyhd8ed1ab_0
-- requests-toolbelt=1.0.0=pyhd8ed1ab_0
 - rich=13.7.1=pyhd8ed1ab_0
-- s3transfer=0.10.2=pyhd8ed1ab_0
 - scanpy=1.10.2=pyhd8ed1ab_0
 - scikit-learn=1.1.3=py311h3b52e38_1
 - scipy=1.13.1=py311h517d4fd_0
 - scvelo=0.3.2=pyhd8ed1ab_1
-- scvi-tools=1.1.6=pyhd8ed1ab_0
+- scvi-tools=1.1.6=pyhd8ed1ab_1
 - seaborn=0.13.2=hd8ed1ab_2
 - seaborn-base=0.13.2=pyhd8ed1ab_2
-- secretstorage=3.3.3=py311h38be061_2
 - session-info=1.0.0=pyhd8ed1ab_0
 - setuptools=72.2.0=pyhd8ed1ab_0
-- shellingham=1.5.4=pyhd8ed1ab_0
 - six=1.16.0=pyh6c4a22f_0
-- sleef=3.6.1=h3400bea_1
+- sleef=3.6.1=h1b44611_3
 - snappy=1.2.1=ha2e4443_0
-- sniffio=1.3.1=pyhd8ed1ab_0
-- soupsieve=2.5=pyhd8ed1ab_1
 - sparse=0.15.4=pyhd8ed1ab_0
-- starlette=0.38.2=pyhd8ed1ab_0
-- starsessions=1.3.0=pyhd8ed1ab_0
 - statsmodels=0.14.2=py311h18e1886_0
 - stdlib-list=0.10.0=pyhd8ed1ab_0
-- svt-av1=2.1.2=hac33072_0
+- svt-av1=2.2.1=h5888daf_0
 - sympy=1.13.2=pypyh2585a3b_103
 - tbb=2021.12.0=h434a139_3
 - tensorstore=0.1.62=py311h865b1b2_0
 - threadpoolctl=3.5.0=pyhc1e730c_0
 - tk=8.6.13=noxft_h4845f30_101
-- tomli=2.0.1=pyhd8ed1ab_0
-- tomlkit=0.13.2=pyha770c72_0
 - toolz=0.12.1=pyhd8ed1ab_0
 - torchmetrics=1.4.0.post0=pyhd8ed1ab_0
 - tqdm=4.66.5=pyhd8ed1ab_0
-- traitlets=5.14.3=pyhd8ed1ab_0
-- trove-classifiers=2024.7.2=pyhd8ed1ab_0
-- typer=0.12.4=pyhd8ed1ab_0
-- typer-slim=0.12.4=pyhd8ed1ab_0
-- typer-slim-standard=0.12.4=hd8ed1ab_0
-- types-python-dateutil=2.9.0.20240821=pyhd8ed1ab_0
 - typing-extensions=4.12.2=hd8ed1ab_0
 - typing_extensions=4.12.2=pyha770c72_0
-- tzdata=2024a=h0c530f3_0
+- tzdata=2024a=h8827d51_1
 - umap-learn=0.5.6=py311h38be061_1
 - urllib3=2.2.2=pyhd8ed1ab_1
-- uvicorn=0.30.6=py311h38be061_0
-- virtualenv=20.26.3=pyhd8ed1ab_0
-- wcwidth=0.2.13=pyhd8ed1ab_0
-- websocket-client=1.8.0=pyhd8ed1ab_0
-- websockets=12.0=py311h459d7ec_0
 - wheel=0.44.0=pyhd8ed1ab_0
 - xarray=2024.7.0=pyhd8ed1ab_0
 - xorg-libxau=1.0.11=hd590300_0
 - xorg-libxdmcp=1.1.3=h7f98852_0
 - xz=5.2.6=h166bdaf_0
 - yaml=0.2.5=h7f98852_2
-- zipp=3.20.0=pyhd8ed1ab_0
+- zipp=3.20.1=pyhd8ed1ab_0
 - zstandard=0.23.0=py311h5cd10c7_0
 - zstd=1.5.6=ha6fb4c9_0