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Bio.Alphabet removed from biopython #21

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kgori opened this issue Jan 7, 2021 · 1 comment
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Bio.Alphabet removed from biopython #21

kgori opened this issue Jan 7, 2021 · 1 comment
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kgori commented Jan 7, 2021

Causes build failure on Travis for python 3.6.

The Alphabet module was removed from biopython 1.79 in Sept 2020. Either need to specify the dependency as <1.79, or remove uses of Alphabet. Will probably remove references to Alphabet, as it always seemed fairly pointless anyway.
@kgori kgori added the bug label Jan 7, 2021
@kgori kgori self-assigned this Jan 7, 2021
kgori added a commit that referenced this issue Jan 7, 2021
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Remove references to biopython alphabet (addresses issue #21)
3cbf16c
kgori added a commit that referenced this issue Jan 7, 2021
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Fixed bug introduced when removing Biopython Alphabet [issue #21]
6d35b90
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kgori commented Jan 8, 2021

This is fixed in dev, but issues #22 and #23 still need to be fixed before making a new release

@kgori kgori closed this as completed Jan 12, 2021
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