update workflows #10
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| --- | |
| name: Lint and test workflow | |
| on: | |
| push: | |
| branches: ['*', '!push-action/*'] | |
| pull_request: | |
| branches: ['*', '!push-action/*'] | |
| jobs: | |
| quality: | |
| name: Lint code | |
| if: github.event.pull_request.merged == false | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Setup Python environment | |
| uses: khanlab/actions/.github/actions/action-setup_task-installPyProject@v0.3.6 | |
| with: | |
| python-version: '3.11' | |
| - name: snakemake lint | |
| run: poetry run snakemake --lint | |
| - name: snakefmt | |
| run: poetry run snakefmt --check workflow | |
| test: | |
| runs-on: ubuntu-latest | |
| needs: [quality] | |
| strategy: | |
| matrix: | |
| python-version: ['3.11'] | |
| steps: | |
| - name: Setup Python environments | |
| uses: khanlab/actions/.github/actions/action-setup_task-installPyProject@v0.3.6 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| install-library: true | |
| - name: Integration dry-run test | |
| run: poetry run snakemake -np |