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Merge pull request #112 from khanlab/akhanf-patch-1
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added missing group directive
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akhanf authored Nov 2, 2021
2 parents 6ad2f2e + b93b8b9 commit 0c10318
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1 change: 1 addition & 0 deletions hippunfold/workflow/rules/gifti.smk
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Expand Up @@ -39,6 +39,7 @@ rule calc_unfold_template_coords:
coords_gii = bids(root='work',datatype='surf_{modality}',den='{density}',suffix='coords.shape.gii', space='{space}',hemi='{hemi}', **config['subj_wildcards']),
container: config['singularity']['autotop']
shadow: 'minimal' #this is required to use the temporary files defined as params
group: 'subj'
shell:
"wb_command -surface-coordinates-to-metric {input.midthickness_gii} {params.coords_xyz} && "
"wb_command -file-information {params.coords_xyz} && "
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