added --version to CLI (via snakebids.yml) (#210)

also updated github actions (will need testing!)
khanlab · Sep 8, 2022 · b3ea65f · b3ea65f
1 parent 91168f1
commit b3ea65f
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Showing 4 changed files with 17 additions and 12 deletions.
diff --git a/.bumpversion.cfg b/.bumpversion.cfg
diff --git a/.github/workflows/bump_version.yml b/.github/workflows/bump_version.yml
@@ -42,13 +42,21 @@ jobs:
           find: 'version = "(?:([0-9]+\.[0-9]+\.[0-9]+.+)|([0-9]+\.[0-9]+\.[0-9]+))"'
           replace: 'version = "${{ steps.release-drafter.outputs.name }}-pre.${{ env.NEW_BUMP }}"'
 
-      - name: Update version in pipeline_description
+      - name: Update version in pipeline_description (not actually used)
         uses: jacobtomlinson/gha-find-replace@master
         with:
           include: 'hippunfold/pipeline_description.json'
-          find: 'version = "(?:([0-9]+\.[0-9]+\.[0-9]+.+)|([0-9]+\.[0-9]+\.[0-9]+))"'
-          replace: 'version = "${{ steps.release-drafter.outputs.name }}-pre.${{ env.NEW_BUMP }}"'
+          find: '"Version": "(?:([0-9]+\.[0-9]+\.[0-9]+.+)|([0-9]+\.[0-9]+\.[0-9]+))"'
+          replace: '"Version": "${{ steps.release-drafter.outputs.name }}-pre.${{ env.NEW_BUMP }}"'
+
+      - name: Update version in config/snakebids.yml
+        uses: jacobtomlinson/gha-find-replace@master
+        with:
+          include: 'hippunfold/config/snakebids.yml'
+          find: 'version: "(?:([0-9]+\.[0-9]+\.[0-9]+.+)|([0-9]+\.[0-9]+\.[0-9]+))"'
+          replace: 'version: "${{ steps.release-drafter.outputs.name }}-pre.${{ env.NEW_BUMP }}"'
 
+
       - name: Commit updates
         env:
           SNAKEBIDS_VERSION: ${{ steps.release-drafter.outputs.name }}-pre.${{ env.NEW_BUMP }}

diff --git a/hippunfold/config/snakebids.yml b/hippunfold/config/snakebids.yml
@@ -125,6 +125,11 @@ parse_args:
           participants can be specified with a space separated list.
     nargs: '+'
 
+  --version:
+    help: 'Print the version of HippUnfold'
+    action: version
+    version: "1.2.0-pre.29"
+
 
   --modality:
     help: 'Type of image to run hippunfold on. Modality prefixed with seg will import an existing (manual) hippocampal tissue segmentation from that space, instead of running neural network (default: %(default)s)'

diff --git a/hippunfold/pipeline_description.json b/hippunfold/pipeline_description.json
@@ -5,7 +5,7 @@
     "GeneratedBy": [
         {
             "Name": "hippunfold",
-            "Version": "0.5.0",
+            "Version": "1.2.0-pre.29",
             "CodeURL": "https://github.com/khanlab/hippunfold",
             "Author": "Jordan DeKraker & Ali Khan",
             "AuthorEmail": "ali.khan@uwo.ca"