Auto-formatting and quality-checks

[akhanf]

this runs automatic code formatting (isort, black, snakefmt) to make the code consistent and easier to read.

[akhanf]

@jordandekraker thought it would be a good time to run the automated formatting since we don't have (any?) other PRs on the go.. if you do have other active branches, the best thing to would be to run: snakefmt hippunfold to automatically format everything before trying to merge, otherwise you will have all sorts of conflicts..

[akhanf]

Once this is merged in, for future PRs you should be able to use poe quality_fix to make sure the code passes the quality checks. I'll also try to set-up some pre-commit hooks to automatically do this at some point in the future..

[jordandekraker]

Looks great! I have no other branches so yes definitely a good time to get this done.

I see you have some other open branches including active poetry and snakebids-0.4.0 - are those still needed? might also be a good time to trim them