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Merge pull request #95 from khanlab/dependabot/pip/pillow-10.2.0 #468

Merge pull request #95 from khanlab/dependabot/pip/pillow-10.2.0

Merge pull request #95 from khanlab/dependabot/pip/pillow-10.2.0 #468

Workflow file for this run

---
name: Lint and test workflow
on:
push:
branches: ["*", "!push-action/*"]
pull_request:
branches: ["*", "!push-action/*"]
jobs:
quality:
name: Lint code
if: github.event.pull_request.merged == false
runs-on: ubuntu-latest
steps:
- name: Setup Python environment
uses: khanlab/actions/.github/actions/action-setup_task-installPyProject@v0.3.0
with:
python-version: "3.10"
- name: yamlfix
run: poetry run poe yamlfix-check
- name: isort
run: poetry run poe isort-check
- name: black
run: poetry run poe black-check
- name: ruff
run: poetry run poe ruff-check
- name: snakefmt
run: poetry run poe snakefmt-check
test:
runs-on: ubuntu-latest
needs: [quality]
strategy:
matrix:
python-version: ["3.8", "3.9", "3.10"]
steps:
- name: Setup Python environments
uses: khanlab/actions/.github/actions/action-setup_task-installPyProject@v0.3.0
with:
python-version: ${{ matrix.python-version }}
install-library: true
- name: Test minimum inputs
run: poetry run poe test_base
- name: Test freesurfer input
run: poetry run poe test_freesurfer
- name: Test responsemean input
run: poetry run poe test_responsemean
- name: Test dwi input
run: poetry run poe test_dwi
- name: Test custom labelmerge inputs
run: poetry run poe test_labelmerge
- name: Test using single atlas (skipping labelmerge)
run: poetry run poe test_skip_labelmerge
- name: Test sessions
run: poetry run poe test_sessions