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We need to add a new expedited document type to capture the genomic workflow output manifest produced by the Bix team after they run the genomic workflows on the source sequencing files within a Study. This manifest will be used by the ingest job to register the harmonized genomic files and link them to their specimens and sequencing experiments in the Dataservice.
znatty22
changed the title
New expedited document for genomic workflow output data
New expedited document type for genomic workflow output data
Oct 22, 2020
See sample manifest in new format (GH forces us to use .txt when attaching files to comments, but this will be .tsv in production use): sample_genomic_workflow_output_manifest.txt
We need to add a new expedited document type to capture the genomic workflow output manifest produced by the Bix team after they run the genomic workflows on the source sequencing files within a Study. This manifest will be used by the ingest job to register the harmonized genomic files and link them to their specimens and sequencing experiments in the Dataservice.
The current manifest format is a JSON file that looks like: https://datatracker.kidsfirstdrc.org/study/SD_8Y99QZJJ/documents/SF_KQZ9MMH6
We would like to change this format to a tabular format so that no additional changes are needed on Data Tracker.
To Do
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