Skip to content
.github/workflows/private.yml

Update codeql.yml #5

Sign in to view logs

Update codeql.yml

Update codeql.yml #5

Workflow file for this run

.github/workflows/private.yml at 916fb7e
name: CodeQL
on:
push:

Check failure on line 6 in .github/workflows/private.yml

View workflow run for this annotation

GitHub Actions / .github/workflows/private.yml

Invalid workflow file 

You have an error in your yaml syntax on line 6
   branches: [ master ] #check branch name
pull_request:
   branches: [ master ] # check branch name
schedule:
   - cron: '0 1 * * 3'
jobs:
analyze:
   name: Analyze
   runs-on: ubuntu-24.04
   strategy:
     fail-fast: false
     matrix:
       language: [ 'cpp', 'c' ]
  
   steps:
   - name: Checkout repository
     uses: actions/checkout@v3
     with:
       token: ${{ secrets.GH_PAT }} #check the secret name
   - name: Set up Python
     uses: actions/setup-python@v4
     with:
       python-version: '3.x'
   - name: Install dependencies
     run: |
       sudo apt-get update
       sudo apt-get install -y tcsh xfonts-base libssl-dev \
                               python-is-python3 \
                               python3-matplotlib python3-numpy \
                               python3-flask python3-flask-cors \
                               python3-pil \
                               gsl-bin netpbm gnome-tweaks \
                               libjpeg62 xvfb xterm vim curl \
                               gedit evince eog \
                               libglu1-mesa-dev libglw1-mesa-dev \
                               libxm4 build-essential \
                               libcurl4-openssl-dev libxml2-dev \
                               libgfortran-14-dev libgomp1 \
                               gnome-terminal nautilus \
                               firefox xfonts-100dpi \
                               r-base-dev cmake bc \
                               libgdal-dev libopenblas-dev \
                               libnode-dev libudunits2-dev
       pip install setuptools
   - name: Clean up disk space
     run: |
       sudo rm -rf /usr/share/dotnet
       sudo rm -rf /opt/ghc
       sudo rm -rf /usr/local/share/boost
       sudo apt-get clean
   - name: Download AFNI setup scripts
     run: |
       curl -O https://raw.githubusercontent.com/afni/afni/master/src/other_builds/OS_notes.linux_ubuntu_24_64_a_admin.txt
       curl -O https://raw.githubusercontent.com/afni/afni/master/src/other_builds/OS_notes.linux_ubuntu_24_64_b_user.tcsh
       curl -O https://raw.githubusercontent.com/afni/afni/master/src/other_builds/OS_notes.linux_ubuntu_24_64_c_nice.tcsh
   - name: Run AFNI admin setup script
     run: sudo bash OS_notes.linux_ubuntu_24_64_a_admin.txt 2>&1 | tee o.ubuntu_24_a.txt
   - name: Run AFNI user setup script
     run: tcsh OS_notes.linux_ubuntu_24_64_b_user.tcsh 2>&1 | tee o.ubuntu_24_b.txt
   - name: Niceify terminal
     run: tcsh OS_notes.linux_ubuntu_24_64_c_nice.tcsh 2>&1 | tee o.ubuntu_24_c.txt
   - name: Clone AFNI repository
     run: git clone https://github.com/YOUR_PRIVATE_REPO_URL.git #Check the repo url
   - name: Configure AFNI with CMake
     run: |
       export CC=$(which gcc)
       export CXX=$(which g++)
       mkdir -p afni/build
       cd afni/build
       cmake ..
     shell: /usr/bin/bash -e {0}
     env:
       pythonLocation: /opt/hostedtoolcache/Python/3.12.4/x64
       PKG_CONFIG_PATH: /opt/hostedtoolcache/Python/3.12.4/x64/lib/pkgconfig
       Python_ROOT_DIR: /opt/hostedtoolcache/Python/3.12.4/x64
       Python2_ROOT_DIR: /opt/hostedtoolcache/Python/3.12.4/x64
       Python3_ROOT_DIR: /opt/hostedtoolcache/Python/3.12.4/x64
       LD_LIBRARY_PATH: /opt/hostedtoolcache/Python/3.12.4/x64/lib
   - name: Build AFNI
     run: |
       cd afni/build
       make
   - name: Initialize the CodeQL toolchain
     uses: github/codeql-action/init@v3
     with:
       languages: cpp,c
   - name: Autobuild
     uses: github/codeql-action/autobuild@v3
     env:
       CC: ${{ env.CC }}
       CXX: ${{ env.CXX }}
   - name: Clean up disk space
     run: |
       sudo rm -rf /usr/share/dotnet
       sudo rm -rf /opt/ghc
       sudo rm -rf /usr/local/share/boost
       sudo apt-get clean
       sudo rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*
      
   - name: Monitor disk space
     run: df -h
   - name: Monitor workspace usage
     run: du -sh /home/runner/work/afni/afni
    
   - name: Perform CodeQL Analysis
     uses: github/codeql-action/analyze@v3