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40 Open 151 Closed
40 Open 151 Closed
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Issues list

vcfR2tidy: behavior when > 1 record at same chrom/POS
#214 opened Aug 26, 2024 by gevro
12
See sequence length
#213 opened Mar 23, 2024 by jenifferteles
1
vcfR Subsetting to the first chromosome
#211 opened Apr 19, 2023 by charbel2998
1
extract.gt() missing heterozygotes
#208 opened Jan 20, 2023 by samarth8392
1
Assign_Indiv_by_Geno.R function of Demuxafy.sif problems with the vcf
#205 opened Jan 11, 2023 by ElenaSLuis
1
vcfR2tidy can't handle files with empty INFO
#200 opened Sep 17, 2022 by alkaZeltser
4
read.vcfR() coredump with empty lines in input
#198 opened Mar 22, 2022 by ntakebay
5
Error: ID column contains non-unique names
#193 opened Dec 17, 2021 by bathycy
1
How to avoid to print the vcfR header?
#191 opened Sep 11, 2021 by Shicheng-Guo
2
does it support vcf comes from vep or vardict
#188 opened Jun 26, 2021 by worker000000
1
Understanding genetic_diff() number of alleles output
#185 opened Jun 11, 2021 by EveTC
4
About vcfR::heatmap.bp, is there a way to scale the heatmap but keep the barplot as sum of unscaled values?
#183 opened Apr 14, 2021 by hope-data-science
2
sex determination
#182 opened Apr 10, 2021 by AnjaliC4
8
overlapping sliding window
#176 opened Dec 5, 2020 by michaeljmetzger
2
vcfR reading INFO/DS field
#174 opened Nov 10, 2020 by meixilin
1
vcfR2genlight failed to convert polyploid of mixed ploidy vcf (obtained by GATK)
#158 opened Apr 29, 2020 by lihe-s
6
blank row crashes R - read.vcfR()
#141 opened Jul 9, 2019 by TomJamesW
4
Improving run time performance
#140 opened Jul 8, 2019 by arumds
3
Parse CSQ entitities into individual columns
#132 opened Apr 30, 2019 by audyavar
4
vcfR2genlight() - variation in ploidy determination
#128 opened Mar 16, 2019 by fdchevalier
5
vcfR2DNAbin() - no sequence label whith DNAbin list type
#127 opened Mar 16, 2019 by fdchevalier
Support Tabix
#125 opened Jan 22, 2019 by romanzenka
9
VCF files should be block-gzipped and not gzipped
#124 opened Jan 15, 2019 by jasper1918
4
vcfR2DNAbin() - problem with DNAbin list type
#122 opened Dec 21, 2018 by fdchevalier
2
extract.haps() does not handle all missing data
#121 opened Dec 19, 2018 by fdchevalier
1
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