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Add enrichment

Add enrichment #5

Workflow file for this run

name: Tests
on:
push:
branches: [ main ]
pull_request:
branches: [ main ]
jobs:
Formatting:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- name: Formatting
uses: github/super-linter@v4
env:
VALIDATE_ALL_CODEBASE: false
DEFAULT_BRANCH: main
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
VALIDATE_SNAKEMAKE_SNAKEFMT: true
Linting:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- name: Lint workflow
uses: snakemake/snakemake-github-action@v1.24.0
with:
directory: .
snakefile: workflow/Snakefile
args: "--lint"
Testing:
runs-on: ubuntu-latest
needs:
- Linting
- Formatting
steps:
- uses: actions/checkout@v2
- name: Test workflow
uses: snakemake/snakemake-github-action@v1.24.0
with:
directory: .test
snakefile: workflow/Snakefile
args: "--use-conda --show-failed-logs --cores 3 --conda-cleanup-pkgs cache --all-temp"
- name: Test report
uses: snakemake/snakemake-github-action@v1.24.0
with:
directory: .test
snakefile: workflow/Snakefile
args: "--report report.zip"