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add flowdash bio secrets to gh
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ktmeaton committed Nov 11, 2020
1 parent 8018466 commit 015270b
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6 changes: 6 additions & 0 deletions .github/workflows/install.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -31,6 +31,8 @@ jobs:
run: |
echo "CONDA_ENVS_PATH=/home/runner/miniconda/envs:/usr/share/miniconda/envs" >> $GITHUB_ENV
echo "CONDA_PKGS_DIRS=/home/runner/miniconda/pkgs" >> $GITHUB_ENV
echo "FLOWDASH_BIO_USERNAME=${{ secrets.FLOWDASH_BIO_USERNAME }}" >> $GITHUB_ENV
echo "FLOWDASH_BIO_PASSWORD=${{ secrets.FLOWDASH_BIO_PASSWORD }}" >> $GITHUB_ENV
#------------------------------------------------------------------------#
# Checkout Repository
- name: checkout repo
Expand Down Expand Up @@ -68,6 +70,8 @@ jobs:
run: |
echo "SINGULARITY_DOCKER_USERNAME=${{ secrets.DOCKERHUB_USERNAME }}" >> $GITHUB_ENV
echo "SINGULARITY_DOCKER_PASSWORD=${{ secrets.DOCKERHUB_PASSWORD }}" >> $GITHUB_ENV
echo "FLOWDASH_BIO_USERNAME=${{ secrets.FLOWDASH_BIO_USERNAME }}" >> $GITHUB_ENV
echo "FLOWDASH_BIO_PASSWORD=${{ secrets.FLOWDASH_BIO_PASSWORD }}" >> $GITHUB_ENV
#SINGULARITY_ROOT: /opt/hostedtoolcache/singularity/3.6.3/x64
#------------------------------------------------------------------------#
# Checkout Repository
Expand Down Expand Up @@ -104,6 +108,8 @@ jobs:
run: |
echo "DOCKER_USERNAME=${{ secrets.DOCKERHUB_USERNAME }}" >> $GITHUB_ENV
echo "DOCKER_PASSWORD=${{ secrets.DOCKERHUB_PASSWORD }}" >> $GITHUB_ENV
echo "FLOWDASH_BIO_USERNAME=${{ secrets.FLOWDASH_BIO_USERNAME }}" >> $GITHUB_ENV
echo "FLOWDASH_BIO_PASSWORD=${{ secrets.FLOWDASH_BIO_PASSWORD }}" >> $GITHUB_ENV
#------------------------------------------------------------------------#
# Checkout Repository
- name: checkout repo
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