remove iqtree branch supports that conflict with nextstrain

ktmeaton · May 15, 2020 · 0f3fccb · 0f3fccb
1 parent 8a09dee
commit 0f3fccb
Showing 1 changed file with 0 additions and 2 deletions.
diff --git a/pipeline.nf b/pipeline.nf
@@ -1040,8 +1040,6 @@ if(!params.skip_iqtree && !params.skip_snippy_multi_filter && !params.skip_snipp
       -o ${params.iqtree_outgroup} \
       -seed ${params.iqtree_rng} \
       -pre iqtree.core-filter${params.snippy_multi_missing_data_text}_bootstrap \
-      -bb 1000 \
-      -alrt 1000 \
       2>&1 | tee iqtree.core-filter${params.snippy_multi_missing_data_text}_bootstrap.output
     """
   }