fix pipeline var typo

ktmeaton · Sep 2, 2020 · 22b0577 · 22b0577
1 parent 02a9237
commit 22b0577
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/.github/workflows/pipeline_sra.yaml b/.github/workflows/pipeline_sra.yaml
@@ -92,7 +92,7 @@ jobs:
           nextflow run -r ${{ github.sha }} ${{github.repository}} \
             --skip_assembly_download \
             --skip_outgroup_download \
-            --sqlite ${SQLITE_DB_PATH} \
+            --sqlite results/ncbimeta_db/update/latest/output/database/yersinia_pestis_db.sqlite \
             --sqlite_select_command_sra "SELECT BioSampleAccession,SRARunAccession,SRALibraryLayout,SRAFileURL FROM Master WHERE (SRARunAccession = 'SRR1048902' OR SRARunAccession = 'SRR1048905')" \
             --outdir test \
             ${GH_RESOURCES} \