update parse_tree notebook and output

ktmeaton · Feb 11, 2021 · 419cbdb · 419cbdb
1 parent fa522bb
commit 419cbdb
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Showing 14 changed files with 23,389 additions and 84,168 deletions.
diff --git a/auspice/plague-phylogeography_parse-tree.json b/auspice/plague-phylogeography_parse-tree.json
diff --git a/config/auspice.config b/config/auspice.config
@@ -8,11 +8,6 @@
     }
   ],
   "colorings": [
-    {
-      "key": "alrt",
-      "title": "SH-aLRT",
-      "type": "continuous"
-    },
     {
       "key": "scf",
       "title": "sCF",
@@ -138,7 +133,7 @@
   "display_defaults": {
     "color_by": "branch_major",
     "distance_measure": "div",
-    "geo_resolution": "country",
+    "geo_resolution": "province",
     "map_triplicate": true,
     "branch_label": "none"
   }