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clarify snpeff config edit
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ktmeaton committed Apr 8, 2020
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -7,6 +7,7 @@ and this project "attempts" to adhere to [Semantic Versioning](http://semver.org
## [Development]
- Rewrite shell scripts in python?
- Overabundance of files in database update and snippy_filtering
- Deal with the fail to publish issue with NCBImeta db

## [v0.1.0] - 2020-04-08

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2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -109,7 +109,7 @@ pip install m2r
```
mkdir ~/miniconda3/envs/phylo-env/share/snpeff-4.3.1t-3/data/Yersinia_pestis_co92
cp results/reference_genome/GCF_000009065.1_ASM906v1_genomic.gbff ~/miniconda3/envs/phylo-env/share/snpeff-4.3.1t-3/data/Yersinia_pestis_co92/genes.gbk;
# Edit snpEff.config file
# Edit ~/miniconda3/envs/phylo-env/share/snpeff-4.3.1t-3/snpEff.config
Yersinia_pestis_co92.genome : Yersinia_pestis_co92
snpEff build -v -genbank Yersinia_pestis_co92
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