mark Latvia samples as low coverage

ktmeaton · Mar 4, 2021 · 642e04b · 642e04b
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diff --git a/docs/main.md b/docs/main.md
@@ -180,6 +180,21 @@ do
 done
 ```
 
+#### SAMEA6502100 (G701)
+
+- Has already been trimmed and merged
+
+```bash
+snakemake \
+   /2/scratch/keaton/plague-phylogeography/results/eager/sra/SAMEA6502107/final_bams/SAMEA6502107.bam \
+  --profile profiles/infoserv \
+  -np \
+  --config eager_other='--skip_adapterremoval' \
+  --configfile project/main/config/snakemake.yaml
+```
+
+#### SAMEA6502107 (G488)
+
 #### Azov38
 
 Merge: SAMEA7313245, SAMEA7313244, SAMEA7313243

diff --git a/results/sqlite_db/yersinia_pestis_db.sqlite b/results/sqlite_db/yersinia_pestis_db.sqlite