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add a conda list export each activate
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ktmeaton committed Jul 21, 2020
1 parent f5303af commit 759a9c4
Showing 1 changed file with 3 additions and 2 deletions.
5 changes: 3 additions & 2 deletions .github/workflows/install.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -63,6 +63,7 @@ jobs:
run: |
conda env create -f ~/.nextflow/assets/ktmeaton/plague-phylogeography/environment.yaml
conda activate ${PHYLO_CONDA_ENV}
conda list --export
conda deactivate
# 4a. Install nf-core/eager
Expand All @@ -81,8 +82,7 @@ jobs:
conda install -n ${EAGER_CONDA_ENV} -c bioconda nextflow
conda install -n ${EAGER_CONDA_ENV} -c anaconda graphviz
conda activate ${EAGER_CONDA_ENV}
dot -v
nextflow -v
conda list --export
conda deactivate
# 5a. Install nextstrain
Expand All @@ -93,4 +93,5 @@ jobs:
conda activate ${NEXTSTRAIN_CONDA_ENV}
npm install --global auspice@2.17.0
auspice --version
conda list --export
conda deactivate

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