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remove sed replacment from config file
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ktmeaton committed Sep 1, 2020
1 parent a16ef0a commit a82ca7c
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8 changes: 0 additions & 8 deletions .github/workflows/pipeline_db.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -75,14 +75,6 @@ jobs:
shell: bash -l {0}
run: scripts/install.sh ${{github.repository}} ${{ github.sha }}
#------------------------------------------------------------------------#
# Configure DB Yaml
# Remove this after update to ncbimeta v0.7.0?
- name: configure DB Yaml
run: |
sed -i "s/EMAIL : myusername@domain.com/EMAIL : ${{ secrets.EMAIL }}/g" config/ncbimeta.yaml
sed -i "s/API_KEY :/API_KEY : ${{ secrets.NCBI_API }}/g" config/ncbimeta.yaml
sed -i "s/FORCE_PAUSE_SECONDS : 1/FORCE_PAUSE_SECONDS : 0/g" config/ncbimeta.yaml
#------------------------------------------------------------------------#
# Create the database
- name: pipeline db create
shell: bash -l {0}
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