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new config for modern assemblies
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ktmeaton committed Jul 5, 2020
1 parent 2f6e97e commit d2489cf
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65 changes: 65 additions & 0 deletions auspice/config/modernAssembly_auspice_config.json
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{
"title": "Plague Modern Assemblies",
"maintainers": [
{"name": "Katherine Eaton", "url": "https://github.com/ktmeaton"}
],
"build_url": "https://github.com/ktmeaton/plague-phylogeography",
"colorings": [
{
"key": "BioSampleAccession",
"title": "BioSample Accession",
"type": "categorical"
},
{
"key": "BioSampleStrain",
"title": "Strain",
"type": "categorical"
},
{
"key": "num_date",
"title": "Estimated Date",
"type": "continuous"
},
{
"key": "country",
"title": "Country",
"type": "categorical"
},
{
"key": "state",
"title": "State",
"type": "categorical"
},
{
"key": "BioSampleBiovar",
"title": "Biovar",
"type": "categorical"
},
{
"key": "BioSampleHost",
"title": "Host",
"type": "categorical"
}
],
"filters": [
"country",
"state"
"BioSampleBiovar",
"BioSampleHost"
],
"geo_resolutions": [
"country"
],
"display_defaults": {
"color_by": "BioSampleBiovar",
"distance_measure": "time",
"geo_resolution": "country",
"map_triplicate": true,
"branch_label": "none"
},
"panels": [
"tree",
"map",
"entropy"
]
}

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