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try 3 datasets instead of 4
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ktmeaton committed Jul 24, 2020
1 parent 9f73566 commit e074b7d
Showing 1 changed file with 1 addition and 2 deletions.
3 changes: 1 addition & 2 deletions .github/workflows/pipeline_assembly.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -91,12 +91,11 @@ jobs:
run: |
conda activate ${PHYLO_CONDA_ENV}
nextflow run -r ${GITHUB_SHA} ${GITHUB_REPOSITORY} \
--max_datasets_assembly 4 \
--max_datasets_assembly 3 \
--skip_sra_download \
--skip_eager \
--skip_outgroup_download \
--iqtree_branch_support \
#--iqtree_runs 10 \
--outdir test \
-resume \
${GH_RESOURCES}
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