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Add a --prefer-binary flag to 'pip install' command #2096

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merged 2 commits into from
Jan 24, 2023
Merged

Add a --prefer-binary flag to 'pip install' command #2096

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e824237
Pin the h5py version with 3.7.0
tenzen-y Jan 24, 2023
c3ce29a
Add a --prefer-binary flag to 'pip install' command
tenzen-y Jan 24, 2023
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2 changes: 1 addition & 1 deletion .github/workflows/template-setup-e2e-test/action.yaml
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Expand Up @@ -29,4 +29,4 @@ runs:

- name: Install Katib SDK
shell: bash
run: pip install -e sdk/python/v1beta1
run: pip install --prefer-binary -e sdk/python/v1beta1
22 changes: 11 additions & 11 deletions Makefile
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Expand Up @@ -42,7 +42,7 @@ endif

yamllint:
ifndef HAS_YAMLLINT
pip install yamllint
pip install --prefer-binary yamllint
$(info "yamllint has been installed")
endif
hack/verify-yamllint.sh
Expand Down Expand Up @@ -150,16 +150,16 @@ update-boilerplate:
./hack/boilerplate/update-boilerplate.sh

prepare-pytest:
pip install -r test/unit/v1beta1/requirements.txt
pip install -r cmd/suggestion/hyperopt/v1beta1/requirements.txt
pip install -r cmd/suggestion/skopt/v1beta1/requirements.txt
pip install -r cmd/suggestion/optuna/v1beta1/requirements.txt
pip install -r cmd/suggestion/hyperband/v1beta1/requirements.txt
pip install -r cmd/suggestion/nas/enas/v1beta1/requirements.txt
pip install -r cmd/suggestion/nas/darts/v1beta1/requirements.txt
pip install -r cmd/suggestion/pbt/v1beta1/requirements.txt
pip install -r cmd/earlystopping/medianstop/v1beta1/requirements.txt
pip install -r cmd/metricscollector/v1beta1/tfevent-metricscollector/requirements.txt
pip install --prefer-binary -r test/unit/v1beta1/requirements.txt
pip install --prefer-binary -r cmd/suggestion/hyperopt/v1beta1/requirements.txt
pip install --prefer-binary -r cmd/suggestion/skopt/v1beta1/requirements.txt
pip install --prefer-binary -r cmd/suggestion/optuna/v1beta1/requirements.txt
pip install --prefer-binary -r cmd/suggestion/hyperband/v1beta1/requirements.txt
pip install --prefer-binary -r cmd/suggestion/nas/enas/v1beta1/requirements.txt
pip install --prefer-binary -r cmd/suggestion/nas/darts/v1beta1/requirements.txt
pip install --prefer-binary -r cmd/suggestion/pbt/v1beta1/requirements.txt
pip install --prefer-binary -r cmd/earlystopping/medianstop/v1beta1/requirements.txt
pip install --prefer-binary -r cmd/metricscollector/v1beta1/tfevent-metricscollector/requirements.txt

prepare-pytest-testdata:
ifeq ("$(wildcard $(TEST_TENSORFLOW_EVENT_FILE_PATH))", "")
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2 changes: 1 addition & 1 deletion cmd/earlystopping/medianstop/v1beta1/Dockerfile
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Expand Up @@ -17,7 +17,7 @@ ADD ./${EARLY_STOPPING_DIR}/ ${TARGET_DIR}/${EARLY_STOPPING_DIR}/

WORKDIR ${TARGET_DIR}/${EARLY_STOPPING_DIR}

RUN pip install --no-cache-dir -r requirements.txt
RUN pip install --prefer-binary --no-cache-dir -r requirements.txt
RUN chgrp -R 0 ${TARGET_DIR} \
&& chmod -R g+rwX ${TARGET_DIR}

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2 changes: 1 addition & 1 deletion cmd/metricscollector/v1beta1/tfevent-metricscollector/Dockerfile
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Expand Up @@ -17,7 +17,7 @@ RUN if [ "${TARGETARCH}" = "arm64" ]; then \
rm -rf /var/lib/apt/lists/*; \
fi

RUN pip install --no-cache-dir -r requirements.txt
RUN pip install --prefer-binary --no-cache-dir -r requirements.txt
RUN chgrp -R 0 ${TARGET_DIR} \
&& chmod -R g+rwX ${TARGET_DIR}

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2 changes: 1 addition & 1 deletion cmd/metricscollector/v1beta1/tfevent-metricscollector/Dockerfile.ppc64le
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@@ -1,6 +1,6 @@
FROM ibmcom/tensorflow-ppc64le:2.2.0-py3
ADD . /usr/src/app/github.com/kubeflow/katib
WORKDIR /usr/src/app/github.com/kubeflow/katib/cmd/metricscollector/v1beta1/tfevent-metricscollector/
RUN pip install --no-cache-dir -r requirements.txt
RUN pip install --prefer-binary --no-cache-dir -r requirements.txt
ENV PYTHONPATH /usr/src/app/github.com/kubeflow/katib:/usr/src/app/github.com/kubeflow/katib/pkg/apis/manager/v1beta1/python:/usr/src/app/github.com/kubeflow/katib/pkg/metricscollector/v1beta1/tfevent-metricscollector/:/usr/src/app/github.com/kubeflow/katib/pkg/metricscollector/v1beta1/common/
ENTRYPOINT ["python", "main.py"]
2 changes: 1 addition & 1 deletion cmd/suggestion/hyperband/v1beta1/Dockerfile
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Expand Up @@ -26,7 +26,7 @@ COPY --from=downloader /bin/grpc_health_probe /bin/grpc_health_probe

WORKDIR ${TARGET_DIR}/${SUGGESTION_DIR}

RUN pip install --no-cache-dir -r requirements.txt
RUN pip install --prefer-binary --no-cache-dir -r requirements.txt
RUN chgrp -R 0 ${TARGET_DIR} \
&& chmod -R g+rwX ${TARGET_DIR}

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4 changes: 2 additions & 2 deletions cmd/suggestion/hyperopt/v1beta1/Dockerfile
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Expand Up @@ -13,7 +13,7 @@ ENV TARGET_DIR /opt/katib
ENV SUGGESTION_DIR cmd/suggestion/hyperopt/v1beta1
ENV PYTHONPATH ${TARGET_DIR}:${TARGET_DIR}/pkg/apis/manager/v1beta1/python:${TARGET_DIR}/pkg/apis/manager/health/python

RUN if [ "${TARGETARCH}" = "ppc64le" ] || [ "${TARGETARCH}" = "aarch64" ]; then \
RUN if [ "${TARGETARCH}" = "ppc64le" ]; then \
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BuildKit propagates TARGETARCH with amd64 or arm64. However, we have been able to build container images for the platform linux/arm64 with an incorrect value, aarch64.

This means we don't need these packages for the platform linux/arm64.

apt-get -y update && \
apt-get -y install gfortran libopenblas-dev liblapack-dev && \
apt-get clean && \
Expand All @@ -26,7 +26,7 @@ COPY --from=downloader /bin/grpc_health_probe /bin/grpc_health_probe

WORKDIR ${TARGET_DIR}/${SUGGESTION_DIR}

RUN pip install --no-cache-dir -r requirements.txt
RUN pip install --prefer-binary --no-cache-dir -r requirements.txt
RUN chgrp -R 0 ${TARGET_DIR} \
&& chmod -R g+rwX ${TARGET_DIR}

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4 changes: 2 additions & 2 deletions cmd/suggestion/nas/darts/v1beta1/Dockerfile
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Expand Up @@ -13,7 +13,7 @@ ENV TARGET_DIR /opt/katib
ENV SUGGESTION_DIR cmd/suggestion/nas/darts/v1beta1
ENV PYTHONPATH ${TARGET_DIR}:${TARGET_DIR}/pkg/apis/manager/v1beta1/python:${TARGET_DIR}/pkg/apis/manager/health/python

RUN if [ "${TARGETARCH}" = "ppc64le" ] || [ "${TARGETARCH}" = "aarch64" ]; then \
RUN if [ "${TARGETARCH}" = "ppc64le" ]; then \
apt-get -y update && \
apt-get -y install gfortran libopenblas-dev liblapack-dev && \
apt-get clean && \
Expand All @@ -26,7 +26,7 @@ COPY --from=downloader /bin/grpc_health_probe /bin/grpc_health_probe

WORKDIR ${TARGET_DIR}/${SUGGESTION_DIR}

RUN pip install --no-cache-dir -r requirements.txt
RUN pip install --prefer-binary --no-cache-dir -r requirements.txt
RUN chgrp -R 0 ${TARGET_DIR} \
&& chmod -R g+rwX ${TARGET_DIR}

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4 changes: 2 additions & 2 deletions cmd/suggestion/nas/enas/v1beta1/Dockerfile
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Expand Up @@ -14,7 +14,7 @@ ENV SUGGESTION_DIR cmd/suggestion/nas/enas/v1beta1
ENV GRPC_HEALTH_PROBE_VERSION v0.4.11
ENV PYTHONPATH ${TARGET_DIR}:${TARGET_DIR}/pkg/apis/manager/v1beta1/python:${TARGET_DIR}/pkg/apis/manager/health/python

RUN if [ "${TARGETARCH}" = "ppc64le" ] || [ "${TARGETARCH}" = "aarch64" ]; then \
RUN if [ "${TARGETARCH}" = "ppc64le" ]; then \
apt-get -y update && \
apt-get -y install gfortran libopenblas-dev liblapack-dev && \
apt-get clean && \
Expand All @@ -27,7 +27,7 @@ COPY --from=downloader /bin/grpc_health_probe /bin/grpc_health_probe

WORKDIR ${TARGET_DIR}/${SUGGESTION_DIR}

RUN pip install --no-cache-dir -r requirements.txt
RUN pip install --prefer-binary --no-cache-dir -r requirements.txt
RUN chgrp -R 0 ${TARGET_DIR} \
&& chmod -R g+rwX ${TARGET_DIR}

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4 changes: 2 additions & 2 deletions cmd/suggestion/optuna/v1beta1/Dockerfile
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Expand Up @@ -13,7 +13,7 @@ ENV TARGET_DIR /opt/katib
ENV SUGGESTION_DIR cmd/suggestion/optuna/v1beta1
ENV PYTHONPATH ${TARGET_DIR}:${TARGET_DIR}/pkg/apis/manager/v1beta1/python:${TARGET_DIR}/pkg/apis/manager/health/python

RUN if [ "${TARGETARCH}" = "ppc64le" ] || [ "${TARGETARCH}" = "aarch64" ]; then \
RUN if [ "${TARGETARCH}" = "ppc64le" ]; then \
apt-get -y update && \
apt-get -y install gfortran libopenblas-dev liblapack-dev && \
apt-get clean && \
Expand All @@ -26,7 +26,7 @@ COPY --from=downloader /bin/grpc_health_probe /bin/grpc_health_probe

WORKDIR ${TARGET_DIR}/${SUGGESTION_DIR}

RUN pip install --no-cache-dir -r requirements.txt
RUN pip install --prefer-binary --no-cache-dir -r requirements.txt
RUN chgrp -R 0 ${TARGET_DIR} \
&& chmod -R g+rwX ${TARGET_DIR}

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4 changes: 2 additions & 2 deletions cmd/suggestion/pbt/v1beta1/Dockerfile
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Expand Up @@ -13,7 +13,7 @@ ENV TARGET_DIR /opt/katib
ENV SUGGESTION_DIR cmd/suggestion/pbt/v1beta1
ENV PYTHONPATH ${TARGET_DIR}:${TARGET_DIR}/pkg/apis/manager/v1beta1/python:${TARGET_DIR}/pkg/apis/manager/health/python

RUN if [ "${TARGETARCH}" = "ppc64le" ] || [ "${TARGETARCH}" = "aarch64" ]; then \
RUN if [ "${TARGETARCH}" = "ppc64le" ]; then \
apt-get -y update && \
apt-get -y install gfortran libopenblas-dev liblapack-dev && \
apt-get clean && \
Expand All @@ -26,7 +26,7 @@ COPY --from=downloader /bin/grpc_health_probe /bin/grpc_health_probe

WORKDIR ${TARGET_DIR}/${SUGGESTION_DIR}

RUN pip install --no-cache-dir -r requirements.txt
RUN pip install --prefer-binary --no-cache-dir -r requirements.txt
RUN chgrp -R 0 ${TARGET_DIR} \
&& chmod -R g+rwX ${TARGET_DIR}

Expand Down
4 changes: 2 additions & 2 deletions cmd/suggestion/skopt/v1beta1/Dockerfile
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Expand Up @@ -13,7 +13,7 @@ ENV TARGET_DIR /opt/katib
ENV SUGGESTION_DIR cmd/suggestion/skopt/v1beta1
ENV PYTHONPATH ${TARGET_DIR}:${TARGET_DIR}/pkg/apis/manager/v1beta1/python:${TARGET_DIR}/pkg/apis/manager/health/python

RUN if [ "${TARGETARCH}" = "ppc64le" ] || [ "${TARGETARCH}" = "aarch64" ]; then \
RUN if [ "${TARGETARCH}" = "ppc64le" ]; then \
apt-get -y update && \
apt-get -y install gfortran libopenblas-dev liblapack-dev && \
apt-get clean && \
Expand All @@ -26,7 +26,7 @@ COPY --from=downloader /bin/grpc_health_probe /bin/grpc_health_probe

WORKDIR ${TARGET_DIR}/${SUGGESTION_DIR}

RUN pip install --no-cache-dir -r requirements.txt
RUN pip install --prefer-binary --no-cache-dir -r requirements.txt
RUN chgrp -R 0 ${TARGET_DIR} \
&& chmod -R g+rwX ${TARGET_DIR}

Expand Down
2 changes: 1 addition & 1 deletion examples/v1beta1/trial-images/darts-cnn-cifar10/Dockerfile.cpu
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Expand Up @@ -6,7 +6,7 @@ ADD examples/v1beta1/trial-images/darts-cnn-cifar10 ${TARGET_DIR}

WORKDIR ${TARGET_DIR}

RUN pip install --no-cache-dir -r requirements.txt
RUN pip install --prefer-binary --no-cache-dir -r requirements.txt
RUN chgrp -R 0 ${TARGET_DIR} \
&& chmod -R g+rwX ${TARGET_DIR}

Expand Down
2 changes: 1 addition & 1 deletion examples/v1beta1/trial-images/enas-cnn-cifar10/Dockerfile.cpu
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Expand Up @@ -15,7 +15,7 @@ RUN if [ "${TARGETARCH}" = "arm64" ]; then \
rm -rf /var/lib/apt/lists/*; \
fi

RUN pip install --no-cache-dir -r requirements.txt
RUN pip install --prefer-binary --no-cache-dir -r requirements.txt
RUN chgrp -R 0 ${TARGET_DIR} \
&& chmod -R g+rwX ${TARGET_DIR}

Expand Down
2 changes: 1 addition & 1 deletion examples/v1beta1/trial-images/enas-cnn-cifar10/Dockerfile.gpu
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Expand Up @@ -10,7 +10,7 @@ ADD examples/v1beta1/trial-images/enas-cnn-cifar10 ${TARGET_DIR}

WORKDIR ${TARGET_DIR}

RUN pip install --no-cache-dir scipy==1.8.1
RUN pip install --prefer-binary --no-cache-dir scipy==1.8.1
RUN chgrp -R 0 ${TARGET_DIR} \
&& chmod -R g+rwX ${TARGET_DIR}

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2 changes: 1 addition & 1 deletion examples/v1beta1/trial-images/mxnet-mnist/Dockerfile
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Expand Up @@ -20,7 +20,7 @@ RUN apt-get -y update \
RUN if [ "${TARGETARCH}" = "arm64" ]; then \
/opt/mxnet-mnist/install-arm-performance-libraries.sh; \
fi
RUN pip install -r requirements.txt
RUN pip install --prefer-binary -r requirements.txt
RUN chgrp -R 0 /opt/mxnet-mnist \
&& chmod -R g+rwX /opt/mxnet-mnist

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2 changes: 1 addition & 1 deletion examples/v1beta1/trial-images/pytorch-mnist/Dockerfile.cpu
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Expand Up @@ -6,7 +6,7 @@ WORKDIR /opt/pytorch-mnist

# Add folder for the logs.
RUN mkdir /katib
RUN pip install --no-cache-dir -r requirements.txt
RUN pip install --prefer-binary --no-cache-dir -r requirements.txt

RUN chgrp -R 0 /opt/pytorch-mnist \
&& chmod -R g+rwX /opt/pytorch-mnist \
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2 changes: 1 addition & 1 deletion examples/v1beta1/trial-images/pytorch-mnist/Dockerfile.gpu
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Expand Up @@ -9,7 +9,7 @@ WORKDIR /opt/pytorch-mnist

# Add folder for the logs.
RUN mkdir /katib
RUN pip install --no-cache-dir -r requirements.txt
RUN pip install --prefer-binary --no-cache-dir -r requirements.txt

RUN chgrp -R 0 /opt/pytorch-mnist \
&& chmod -R g+rwX /opt/pytorch-mnist \
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2 changes: 1 addition & 1 deletion examples/v1beta1/trial-images/simple-pbt/Dockerfile
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Expand Up @@ -4,7 +4,7 @@ ADD examples/v1beta1/trial-images/simple-pbt /opt/pbt

WORKDIR /opt/pbt

RUN python3 -m pip install -r requirements.txt
RUN python3 -m pip install --prefer-binary -r requirements.txt
RUN chgrp -R 0 /opt/pbt \
&& chmod -R g+rwX /opt/pbt

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2 changes: 1 addition & 1 deletion examples/v1beta1/trial-images/tf-mnist-with-summaries/Dockerfile
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Expand Up @@ -13,7 +13,7 @@ RUN if [ "${TARGETARCH}" = "arm64" ]; then \
rm -rf /var/lib/apt/lists/*; \
fi

RUN pip install --no-cache-dir -r requirements.txt
RUN pip install --prefer-binary --no-cache-dir -r requirements.txt
RUN chgrp -R 0 /opt/tf-mnist-with-summaries \
&& chmod -R g+rwX /opt/tf-mnist-with-summaries

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2 changes: 1 addition & 1 deletion sdk/python/v1beta1/kubeflow/katib/utils/utils.py
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Expand Up @@ -102,7 +102,7 @@ def get_script_for_python_packages(packages_to_install, pip_index_url):
python3 -m ensurepip || python3 -m ensurepip --user || apt-get install python3-pip
fi

PIP_DISABLE_PIP_VERSION_CHECK=1 python3 -m pip install --quiet \
PIP_DISABLE_PIP_VERSION_CHECK=1 python3 -m pip install --prefer-binary --quiet \
--no-warn-script-location --index-url {pip_index_url} {packages_str}
"""
)
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