[Makefile:132: hydrate-kubeflow] Error 1

[ryo-matsuzaka]

At Deploy using kubectl and kpt,
when I run make apply, then I got the bellow error.

./kustomize build --load_restrictor none -o .build/kubeflow-apps ./instance/kustomize/kubeflow-apps
Error: accumulating resources: accumulateFile "accumulating resources from '../../../upstream/manifests/stacks/gcp': read /home/uyorikazatsuma/kubeflow/upstream/manifests/stacks/gcp: is a directory", accumulateDirector: "recursed accumulation of path '/home/uyorikazatsuma/kubeflow/upstream/manifests/stacks/gcp': accumulating resources: accumulateFile \"accumulating resources from '../../pipeline/installs/multi-user': read /home/uyorikazatsuma/kubeflow/upstream/manifests/pipeline/installs/multi-user: is a directory\", accumulateDirector: \"recursed accumulation of path '/home/uyorikazatsuma/kubeflow/upstream/manifests/pipeline/installs/multi-user': accumulating resources: accumulateFile \\\"accumulating resources from 'api-service': read /home/uyorikazatsuma/kubeflow/upstream/manifests/pipeline/installs/multi-user/api-service: is a directory\\\", accumulateDirector: \\\"couldn't make target for path '/home/uyorikazatsuma/kubeflow/upstream/manifests/pipeline/installs/multi-user/api-service': json: unknown field \\\\\\\"env\\\\\\\"\\\"\""
make: *** [Makefile:132: hydrate-kubeflow] Error 1

How can I solve this error?
Maybe it is related to this.

[issue-label-bot]

Issue-Label Bot is automatically applying the labels:

Label	Probability
platform/gcp	0.56
area/docs	0.59
kind/bug	0.88

Please mark this comment with 👍 or 👎 to give our bot feedback!
Links: app homepage, dashboard and code for this bot.

[angoothachap]

I tried to run the command without the --load_restrictor none and I get the below error:

teDirector: "recursed accumulation of path './istio-1.4.10-asm.18/kfdir/upstream/manifests/stacks/gcp': accumulating resources: accumulateFile \"accumulating resources from '../../admission-webhook/webhook/v3':
 './istio-1.4.10-asm.18/kfdir/upstream/manifests/admission-webhook/webhook/v3' must resolve to a file\", accumulateDirector: \"recursed accumulation of path './istio-1.4.10-asm.18/kfdir/ups
tream/manifests/admission-webhook/webhook/v3': accumulating resources: accumulateFile \\\"accumulating resources from '../overlays/application/application.yaml': security; file './istio-1.4.10-asm.18/kfdir/upst
ream/manifests/admission-webhook/webhook/overlays/application/application.yaml' is not in or below './istio-1.4.10-asm.18/kfdir/upstream/manifests/admission-webhook/webhook/v3'\\\", loader.New \\\"error loading
 ../overlays/application/application.yaml with git: url lacks host: ../overlays/application/application.yaml, dir: got file 'application.yaml', but './istio-1.4.10-asm.18/kfdir/upstream/manifests/admission-webh
ook/webhook/overlays/application/application.yaml' must be a directory to be a root, get: invalid source string: ../overlays/application/application.yaml\\\"\""

PS: I replaced my home directory with . in the above error stack

[angoothachap]

/assign @Bobgy @joeliedtke @rmgogogo

[Bobgy]

@ryo-matsuzaka Did you install kustomize 3.2.1?
It seems the kustomize breaking change after that --- "removal of env field support"

[Bobgy]

Upstream issue in kubeflow: kubeflow/manifests#538

[angoothachap]

@Bobgy Yes, I did use 3.2.1 as in the documentation. Do you suggest using a lower version?

[Bobgy]

No, that's correct, let me try to reproduce

[rcarmstrong]

Experiencing the same issue when running make apply for a GCP deployment, specifically when it hits kustomize build --load_restrictor none -o .build/kubeflow-apps ./instance/kustomize/kubeflow-apps, I get the following error:

Error: accumulating resources: accumulateFile "accumulating resources from '../../../upstream/manifests/stacks/gcp': read /home/rarmstrong/kubeflow/deployment/upstream/manifests/stacks/gcp: is a directory", accumulateDirector: "recursed accumulation of path '/home/rarmstrong/kubeflow/deployment/upstream/manifests/stacks/gcp': accumulating resources: accumulateFile \"accumulating resources from '../../pipeline/installs/multi-user': read /home/rarmstrong/kubeflow/deployment/upstream/manifests/pipeline/installs/multi-user: is a directory\", accumulateDirector: \"recursed accumulation of path '/home/rarmstrong/kubeflow/deployment/upstream/manifests/pipeline/installs/multi-user': accumulating resources: accumulateFile \\\"accumulating resources from 'api-service': read /home/rarmstrong/kubeflow/deployment/upstream/manifests/pipeline/installs/multi-user/api-service: is a directory\\\", accumulateDirector: \\\"couldn't make target for path '/home/rarmstrong/kubeflow/deployment/upstream/manifests/pipeline/installs/multi-user/api-service': json: unknown field \\\\\\\"env\\\\\\\"\\\"\""

Is there a known work around? Thank you.

[Bobgy]

This looks exactly like kubeflow/metadata#202

Can you confirm kustomize version by

kustomize version

Or edit the file in the error message to replace the env field with envs as suggested in above issue

[thesuperzapper]

This has been resolved by the new manifests refactor kubeflow/manifests#1777

But google does need to update their distribution docs on the website.

/close

[google-oss-robot]

@thesuperzapper: Closing this issue.

In response to this:

This has been resolved by the new manifests refactor kubeflow/manifests#1777

But google does need to update their distribution docs on the website.

/close

Instructions for interacting with me using PR comments are available here. If you have questions or suggestions related to my behavior, please file an issue against the kubernetes/test-infra repository.