Unsimplified Classes from IDEAS segmentation of hematopoietic stem cells

0 Quiescent
1 Transcribed
2 Heterochromatin
3 Polycomb
4 Enhancer-like
5 Enhancer-like & Active
6 Active
7 CTCF Bound
8 Transcribed & Enhancer-like
9 Enhnacer-like & nuclease accessible
10 Promoter-like & nuclease accessible & active
11 Promoter-like & enhnacer-like
12 Enhancer-like & nuclease accessible & active
13 CTCF bound & nuclease accessible
14 Transcribed & Enhancer-like & active
15 Promoter-like & nuclease accessible
16 Polycomb & Heterochromatin
17 Heterochromatin & Transcribed
18 Promoter-like & active
19 Promoter-like & Enhancer-like & Active
20 Bivalent & Enhancer-like
21 Promoter-like & Enhancer-like & nuclease accessible & Active
22 Bivalent & promoter-like & enhancer-like
23 Enhancer-like & promoter-like & nuclease acessible & active & transcribed
24 promoter-like & enhancer-like & nuclease accessible & CTCF bound & active
25 Transcribed & CTCF bound
26 CTCF Bound & Nuclease Accessible & Enhancer-like & Transcribed\

VISION IDEAS 27 epigenetic states

Simplified Classes merging the IDEAS classes according to similar function/color (newLabel Dictionary in tensorMatrix_simplifyClasses.py)

0 - Greens: 1, 8, 14, 17, 25
1 - Yellows: 4, 5
2 - Blues: 2, 3, 16, 20, 22
3 - Purples/Pinks: 7, 9, 13, 26
4 - Oranges/Reds: 6, 10, 11, 12, 15, 18, 19, 21, 23, 24

Alternate Simplified Classes (newLabel2 Dictionary in tensorMatrix_simplifyClasses.py)

0 - Greens: 1, 8, 14, 17, 25
1 - Yellows: 4, 5
2 - Blues: 3, 16, 20, 22
3 - Purples/Pinks: 7, 9, 13, 26
4 - Reds: 10, 11, 15, 18, 21, 24
5 - Oranges: 6, 12, 19, 23
6 - Gray: 2