SlicerCineTrack

Main:

Dev:

SlicerCineTrack is a 3D Slicer extension designed for the visual verification of target tracking results. The ROI segmentation is resampled according to user-provided transformation data and overlaid on a set of time-series medical images.

DISCLAIMER: This software is not intended for clinical use.

What can SlicerCineTrack do?

Please take a look at documentation page on SlicerCineTrack's Homepage.

Directory Tree Description

Track

• Main SlicerCineTrack module directory

Track/Resources

• Holds various resource files that may be used by SlicerCineTrack like Icon and UI elements

Setup Instructions

The video below demonstrates sample usage and behaviour of SlicerCineTrack. This demo can also be performed locally, using the provided steps and dataset below.

SlicerCineTrack.Tutorial.mp4

1. Install the "SlicerCineTrack" extension from the 3D Slicer extension manager

2. Reopen 3D Slicer and click on the module selection dropdown menu and find the SlicerCineTrack module under:

   SlicerCineTrack -> Track

3. Download a sample dataset You can use either of the 2 datasets below:

   • Dataset 1
   • Dataset 2

4. Unzip the data into folder Track/Data

5. Use the input selectors to import the sample data from the Track/Data folder:

   • Cine Images : Track/Data/2D Cine Images
   • Segmentation File : Track/Data/Segmentation.mha
   • Transforms File : Track/Data/Transforms.csv

6. Press the Play button to begin playback

Using the Preview Release of SlicerCineTrack for Development

1. Navigate to the desired location and clone this repository using:

   git clone https://github.com/laboratory-for-translational-medicine/SlicerCineTrack.git
   

   Ensure that the branch is set to the dev branch, as it contains the latest changes.

2. To access the module within your 3D Slicer installation you must first make the module available to 3D Slicer. Open 3D Slicer and click:

   Edit -> Application Settings -> Modules

   Now add the path to the Track folder within the Additional module paths selection box

• Hint: Click on the >> button to show the Add button
• Ensure to add the path to SlicerCineTrack/Track
• After the path is added, the program will restart

Extension Development

See the dev wiki for SlicerCineTrack development information.