Description
Hi all, I get the deprecation warning below when using h5py 2.10.0. It appears in runmanager when compiling shots and in lyse when analysis scripts run.
C:\Users\waveguide3\Desktop\labscript_test_install_3\labscript_utils\h5_lock.py:64: H5pyDeprecationWarning: The default file mode will change to 'r' (read-only) in h5py 3.0. To suppress this warning, pass the mode you need to h5py.File(), or set the global default h5.get_config().default_file_mode, or set the environment variable H5PY_DEFAULT_READONLY=1. Available modes are: 'r', 'r+', 'w', 'w-'/'x', 'a'. See the docs for details.
_File.__init__(self, name, mode, driver, libver, **kwds)This was done using labscript-utils mercurial changeset e5a908bdc9cb. In the most recent git commit, this command is now on line 53:
.Looks like having mode=None is deprecated now. The h5py code for handling that case is here: https://github.com/h5py/h5py/blob/497d6a8ccbf3519fea2cd10093d0cee5da72358a/h5py/_hl/files.py#L188. I'm not very familiar with h5_lock.py but it may be fine to just use mode='a'. Alternatively the old h5py behavior could be reproduced by recreating those try/except statements from h5py in h5lock.py.
The warning pollutes the terminal outputs in runmanager and lyse but doesn't prevent anything from working, so this is a pretty minor issue. Also, h5py 2.9.0 works fine and doesn't issue this warning.