General ideas

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sacha schutz edited this page Apr 17, 2019 · 7 revisions

Query Module

Transition / Transversion plot
HPO widget

Variant Module

3d protein viewer
gene view ( from refseq )
BAM viewer
Literature associated
show TAD https://github.com/deeptools/pyGenomeTracks
HGVS checker
Plot field value distribution and show where the actual variant is located
Annotate variant with https://github.com/biothings/myvariant.py

Static Module

hapmap on private/public variant
Upset plot for samples intersection
Filter strategie for de Novo, recessif, dominant, X-linked
ANPGM scoring tools
relatedness2 de vcftools / kinship

Settings

Genom : Download IGV genom / set location
Variant: Set a list of " open variant with" : exemple : http://{chrom}-{pos}......