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Update README.md
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staszekdh authored Sep 13, 2024
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Expand Up @@ -64,7 +64,7 @@ In the examples above, `database` defines a directory where sequence embeddings

The batch size (number of sequences per batch) is set with the `-bs` option. Setting `-bs` to `0` activates the adaptive mode, in which the batch size is set so that all included sequences have no more than 3000 residues (this value can be changed with `--res_per_batch`).

The use of `--gpu` is highly recommended for large datasets. To run `embeddings.py` on multiple GPUs, specify `-proc X` where `X` is the number of GPU devices you want to use.
The use of `--gpu` is highly recommended for large datasets. To run `embeddings.py` on multiple GPUs, specify `-nproc X` where `X` is the number of GPU devices you want to use.

### Checkpointing feature

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