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@labsyspharm

Laboratory of Systems Pharmacology @ Harvard

Reinventing the fundamental science underlying the development of new medicines and their use in individual patients.

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  1. ashlar ashlar Public

    ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration

    Python 134 43

  2. mcmicro mcmicro Public

    Multiple-choice microscopy pipeline

    Nextflow 118 58

  3. scimap scimap Public

    Spatial Single-Cell Analysis Toolkit

    Python 83 28

  4. minerva-story minerva-story Public

    Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue images.

    HTML 50 14

  5. cylinter cylinter Public

    An Interactive Image Segmentation Filter for Multiplex Microscopy

    Python 28 12

  6. minerva_analysis minerva_analysis Public

    JavaScript 26 6

Repositories

Showing 10 of 158 repositories
  • ad-personalized Public
    labsyspharm/ad-personalized’s past year of commit activity
    R 0 MIT 0 0 0 Updated Jan 28, 2025
  • scimap Public

    Spatial Single-Cell Analysis Toolkit

    labsyspharm/scimap’s past year of commit activity
    Python 83 MIT 28 37 2 Updated Jan 27, 2025
  • vae-paper Public
    labsyspharm/vae-paper’s past year of commit activity
    Jupyter Notebook 2 MIT 2 0 0 Updated Jan 23, 2025
  • minerva_analysis Public
    labsyspharm/minerva_analysis’s past year of commit activity
    JavaScript 26 MIT 6 22 4 Updated Jan 22, 2025
  • incucyte_stabilizer Public
    labsyspharm/incucyte_stabilizer’s past year of commit activity
    Python 0 0 0 0 Updated Jan 16, 2025
  • peripheral-neuropathy Public
    labsyspharm/peripheral-neuropathy’s past year of commit activity
    0 0 0 0 Updated Jan 16, 2025
  • ad-rna-editing Public
    labsyspharm/ad-rna-editing’s past year of commit activity
    R 0 1 0 0 Updated Jan 14, 2025
  • minerva-author-ui Public

    Minerva Author is an authoring tool used to create Minerva narrated stories via selection of specific channel groupings and image views.

    labsyspharm/minerva-author-ui’s past year of commit activity
    JavaScript 4 MIT 5 2 4 Updated Jan 9, 2025
  • beta-segmentinator Public
    labsyspharm/beta-segmentinator’s past year of commit activity
    Python 0 0 0 0 Updated Jan 2, 2025
  • paired-eval Public

    Fast implementation of paired eval

    labsyspharm/paired-eval’s past year of commit activity
    Python 0 MIT 2 0 0 Updated Dec 28, 2024
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