fix : Fix CairoRunner::get_memory_holes

[fmoletta]

This PR aims to fix the get_memory_holes method which was uncorreclty counting memory holes for builtin segments.
In the python VM, all addresses in the builtin's segment are marked as accessed before counting memory holes. In this PR, builtin segments are skipped when counting memory holes instead.

Changes:

• Skip builtin segements when counting memory holes

• Check amount of memory holes for all tests in cairo_run_test

• Remove duplicated tests in cairo_run_test

Checklist

• Linked to Github Issue
• Unit tests added
• Integration tests added.
• This change requires new documentation.
  • Documentation has been added/updated.
  • CHANGELOG has been updated.

[github-actions]

Benchmark Results for unmodified programs 🚀

Command	Mean [s]	Min [s]	Max [s]	Relative
base blake2s_integration_benchmark	2.771 ± 0.017	2.753	2.812	1.00
head blake2s_integration_benchmark	2.772 ± 0.032	2.747	2.858	1.00 ± 0.01

Command	Mean [s]	Min [s]	Max [s]	Relative
base compare_arrays_200000	3.388 ± 0.041	3.344	3.474	1.00 ± 0.01
head compare_arrays_200000	3.377 ± 0.022	3.343	3.421	1.00

Command	Mean [s]	Min [s]	Max [s]	Relative
base dict_integration_benchmark	2.544 ± 0.022	2.527	2.603	1.00
head dict_integration_benchmark	2.557 ± 0.017	2.534	2.590	1.00 ± 0.01

Command	Mean [s]	Min [s]	Max [s]	Relative
base factorial_multirun	4.113 ± 0.056	4.066	4.247	1.01 ± 0.02
head factorial_multirun	4.077 ± 0.039	4.053	4.184	1.00

Command	Mean [s]	Min [s]	Max [s]	Relative
base fibonacci_1000_multirun	3.282 ± 0.020	3.263	3.314	1.00 ± 0.01
head fibonacci_1000_multirun	3.272 ± 0.016	3.258	3.308	1.00

Command	Mean [ms]	Min [ms]	Max [ms]	Relative
base field_arithmetic_get_square_benchmark	129.1 ± 0.7	128.1	130.6	1.00
head field_arithmetic_get_square_benchmark	129.1 ± 0.6	128.2	130.1	1.00 ± 0.01

Command	Mean [s]	Min [s]	Max [s]	Relative
base integration_builtins	3.346 ± 0.029	3.311	3.416	1.00 ± 0.01
head integration_builtins	3.333 ± 0.015	3.309	3.352	1.00

Command	Mean [s]	Min [s]	Max [s]	Relative
base keccak_integration_benchmark	3.018 ± 0.007	3.005	3.030	1.00
head keccak_integration_benchmark	3.019 ± 0.014	3.004	3.053	1.00 ± 0.01

Command	Mean [s]	Min [s]	Max [s]	Relative
base linear_search	3.496 ± 0.017	3.467	3.523	1.01 ± 0.01
head linear_search	3.471 ± 0.016	3.456	3.512	1.00

Command	Mean [s]	Min [s]	Max [s]	Relative
base math_cmp_and_pow_integration_benchmark	2.920 ± 0.015	2.906	2.959	1.00 ± 0.01
head math_cmp_and_pow_integration_benchmark	2.915 ± 0.013	2.905	2.951	1.00

Command	Mean [s]	Min [s]	Max [s]	Relative
base math_integration_benchmark	2.636 ± 0.016	2.612	2.663	1.00 ± 0.01
head math_integration_benchmark	2.625 ± 0.008	2.614	2.635	1.00

Command	Mean [s]	Min [s]	Max [s]	Relative
base memory_integration_benchmark	2.339 ± 0.007	2.324	2.348	1.00 ± 0.01
head memory_integration_benchmark	2.331 ± 0.020	2.308	2.371	1.00

Command	Mean [s]	Min [s]	Max [s]	Relative
base operations_with_data_structures_benchmarks	2.345 ± 0.024	2.324	2.397	1.00
head operations_with_data_structures_benchmarks	2.347 ± 0.020	2.325	2.398	1.00 ± 0.01

Command	Mean [s]	Min [s]	Max [s]	Relative
base pedersen	3.354 ± 0.026	3.330	3.410	1.00 ± 0.01
head pedersen	3.346 ± 0.015	3.328	3.378	1.00

Command	Mean [s]	Min [s]	Max [s]	Relative
base poseidon_integration_benchmark	1.465 ± 0.004	1.459	1.472	1.00
head poseidon_integration_benchmark	1.475 ± 0.005	1.466	1.483	1.01 ± 0.00

Command	Mean [s]	Min [s]	Max [s]	Relative
base secp_integration_benchmark	2.631 ± 0.014	2.618	2.665	1.00
head secp_integration_benchmark	2.635 ± 0.015	2.621	2.674	1.00 ± 0.01

Command	Mean [s]	Min [s]	Max [s]	Relative
base set_integration_benchmark	1.943 ± 0.008	1.937	1.959	1.00
head set_integration_benchmark	1.946 ± 0.008	1.935	1.961	1.00 ± 0.01

Command	Mean [s]	Min [s]	Max [s]	Relative
base uint256_integration_benchmark	4.121 ± 0.012	4.101	4.139	1.00 ± 0.00
head uint256_integration_benchmark	4.112 ± 0.010	4.101	4.137	1.00

[codecov]

Codecov Report

Merging #1027 (342efdb) into main (cdc28b0) will increase coverage by 0.00%.
The diff coverage is 100.00%.

@@           Coverage Diff           @@
##             main    #1027   +/-   ##
=======================================
  Coverage   98.07%   98.07%           
=======================================
  Files          78       78           
  Lines       32498    32541   +43     
=======================================
+ Hits        31873    31916   +43     
  Misses        625      625           

Impacted Files	Coverage Δ
src/vm/runners/cairo_runner.rs	98.10% <100.00%> (+0.02%)	⬆️
src/vm/vm_memory/memory_segments.rs	98.99% <100.00%> (+<0.01%)	⬆️

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