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Consistently use slice for arrays
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Koncopd committed Sep 12, 2024
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10 changes: 5 additions & 5 deletions docs/cellxgene.ipynb
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"You can use the CELLxGENE data in two ways:\n",
"\n",
"1. Query collections of `AnnData` objects.\n",
"2. Query a big array store produced by concatenated `AnnData` objects via `tiledbsoma`.\n",
"2. Slice a big array store produced by concatenated `AnnData` objects via `tiledbsoma`.\n",
"\n",
"If you are interested in building similar data assets in-house:\n",
"\n",
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"id": "c6b4ac47",
"metadata": {},
"source": [
"We now have an `AnnDataAccessor` object, which behaves much like an `AnnData`, and the query looks the same.\n",
"We now have an `AnnDataAccessor` object, which behaves much like an `AnnData`, and slicing looks similar to the query above.\n",
"\n",
":::{dropdown} See the query\n",
":::{dropdown} See the slicing operation\n",
"\n",
"```\n",
"adata_backed_slice = adata_backed[\n",
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"id": "a292d3a4",
"metadata": {},
"source": [
"Create a query expression for a `tiledbsoma` array store."
"Create a slicing expression for a `tiledbsoma` array store."
]
},
{
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"id": "fbabe437",
"metadata": {},
"source": [
"Query slices within the array store. (This will run a lot faster from within the AWS `us-west-2` data center.)"
"Perform slicing of the array store. (This will run a lot faster from within the AWS `us-west-2` data center.)"
]
},
{
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