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perf: transpose the PQ codes to improve search performance #3120

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merged 15 commits into from
Nov 13, 2024

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BubbleCal
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@BubbleCal BubbleCal commented Nov 12, 2024

30% improved:

5242880,L2,PQ=96,DIM=1536
                        time:   [161.24 ms 162.71 ms 164.08 ms]
                        change: [-30.390% -29.789% -29.192%] (p = 0.00 < 0.10)
                        Performance has improved.

Benchmarking 5242880,Cosine,PQ=96,DIM=1536: Warming up for 3.0000 s
Warning: Unable to complete 10 samples in 5.0s. You may wish to increase target time to 9.2s or enable flat sampling.
5242880,Cosine,PQ=96,DIM=1536
                        time:   [165.53 ms 167.12 ms 168.49 ms]
                        change: [-30.725% -30.233% -29.772%] (p = 0.00 < 0.10)
                        Performance has improved.

Signed-off-by: BubbleCal <bubble-cal@outlook.com>
Signed-off-by: BubbleCal <bubble-cal@outlook.com>
Signed-off-by: BubbleCal <bubble-cal@outlook.com>
Signed-off-by: BubbleCal <bubble-cal@outlook.com>
Signed-off-by: BubbleCal <bubble-cal@outlook.com>
Signed-off-by: BubbleCal <bubble-cal@outlook.com>
Signed-off-by: BubbleCal <bubble-cal@outlook.com>
Signed-off-by: BubbleCal <bubble-cal@outlook.com>
Signed-off-by: BubbleCal <bubble-cal@outlook.com>
Signed-off-by: BubbleCal <bubble-cal@outlook.com>
Signed-off-by: BubbleCal <bubble-cal@outlook.com>
Signed-off-by: BubbleCal <bubble-cal@outlook.com>
@BubbleCal BubbleCal marked this pull request as ready for review November 13, 2024 09:26
Signed-off-by: BubbleCal <bubble-cal@outlook.com>
Signed-off-by: BubbleCal <bubble-cal@outlook.com>
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codecov-commenter commented Nov 13, 2024

Codecov Report

Attention: Patch coverage is 97.08738% with 6 lines in your changes missing coverage. Please review.

Project coverage is 77.13%. Comparing base (4ab270b) to head (b5302f7).

Files with missing lines Patch % Lines
rust/lance-index/src/vector/pq/storage.rs 94.82% 1 Missing and 2 partials ⚠️
rust/lance/src/index/vector/builder.rs 85.71% 0 Missing and 1 partial ⚠️
rust/lance/src/index/vector/ivf.rs 83.33% 0 Missing and 1 partial ⚠️
rust/lance/src/index/vector/pq.rs 98.03% 1 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main    #3120      +/-   ##
==========================================
+ Coverage   77.12%   77.13%   +0.01%     
==========================================
  Files         240      240              
  Lines       80652    80759     +107     
  Branches    80652    80759     +107     
==========================================
+ Hits        62203    62296      +93     
  Misses      15279    15279              
- Partials     3170     3184      +14     
Flag Coverage Δ
unittests 77.13% <97.08%> (+0.01%) ⬆️

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Very cool trick! It looks like transpose is a configurable option of sorts (maybe just at lower levels). Is it possible to setup a unit test that calculates distances with transpose and calculates distances without transpose and verifies they are the same?

Comment on lines +662 to +663
#[case(4, DistanceType::Cosine, 0.9)]
#[case(4, DistanceType::Dot, 0.9)]
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Why did these results change? Shouldn't transposing not affect the calculation?

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not related to transposing
I think IVF_PQ can always reach this recall, these tests were added when working on HNSW, which would result in low recall with the other distance types, looks like I copied HNSW's tests and forgot to modify the thresholds for IVF_PQ

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added a test to verify the results are the same as without transposing

Signed-off-by: BubbleCal <bubble-cal@outlook.com>
@BubbleCal BubbleCal merged commit 961cd95 into lancedb:main Nov 13, 2024
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3 participants