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Clean up CT examples #563

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merged 81 commits into from
Oct 24, 2024
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9a48062
Bump maximum jaxlib/jax version and resolve some errors and warnings
bwohlberg Sep 19, 2024
7e82aa1
Handle get_backend change in jax 0.4.33
bwohlberg Sep 24, 2024
97eae59
Update checkpoint interface
crstngc Sep 24, 2024
27e6aa8
Remove unserializable partial functool from checkpoint
crstngc Sep 24, 2024
9fd4df5
Update orbax-checkpoint version constraint
bwohlberg Sep 25, 2024
485a651
Merge branch 'main' into brendt/jax-version-update
bwohlberg Sep 25, 2024
3a2b29a
Switch from astra to scico 2D projector
bwohlberg Sep 25, 2024
a0ec8db
Renamed MoDL and ODP CT examples
bwohlberg Sep 25, 2024
c043d01
Minor edits
bwohlberg Sep 25, 2024
50589ff
Bug fix
bwohlberg Sep 25, 2024
363e7c2
Choose parameters so that astra and scico projectors are equivalent
bwohlberg Sep 25, 2024
f3ce9d2
Better choice of det_count parameter
bwohlberg Sep 25, 2024
347d229
Fix test
bwohlberg Sep 25, 2024
8687bd0
Improve installation instructions
bwohlberg Sep 27, 2024
cfb7aaa
Improve warning in DnCNN function prox docs
bwohlberg Sep 27, 2024
5a29ef3
Typo fix
bwohlberg Sep 27, 2024
cf360bd
Bump copyright year
bwohlberg Sep 27, 2024
3dd11d7
Resolve typing error
bwohlberg Sep 27, 2024
dfdab90
Merge branch 'brendt/jax-version-update' into brendt/de-astra-fy
bwohlberg Sep 27, 2024
2a64c96
Merge branch 'main' into brendt/de-astra-fy
bwohlberg Oct 2, 2024
4d6c632
Add filtered back projection for 2D projector
bwohlberg Oct 5, 2024
1497ee6
Update change summary
bwohlberg Oct 5, 2024
97f3b05
Docstring fixes
bwohlberg Oct 5, 2024
ff1e235
Resolve errors in jitting method
bwohlberg Oct 6, 2024
9a1e217
Merge branch 'brendt/fbp' into brendt/de-astra-fy-extended
bwohlberg Oct 8, 2024
00e3cb6
Switch to scico projector for CT training data generation
bwohlberg Oct 8, 2024
30071df
Rename example
bwohlberg Oct 8, 2024
3772c50
Rename example
bwohlberg Oct 8, 2024
050fb87
Add conditional in case of prior ray.init
bwohlberg Oct 8, 2024
16ce866
Bug fix
bwohlberg Oct 8, 2024
b2c87ef
Trivial edit
bwohlberg Oct 8, 2024
68ff3b5
Bug fix
bwohlberg Oct 8, 2024
28b0a61
Improve consistency with similar examples
bwohlberg Oct 8, 2024
8d75256
Bug fix
bwohlberg Oct 8, 2024
41a09ae
Typo fix
bwohlberg Oct 8, 2024
ad3e59d
Remove astra import test
bwohlberg Oct 8, 2024
69a0525
Bug fix
bwohlberg Oct 8, 2024
5d37894
Some improvements
bwohlberg Oct 9, 2024
36e68c7
Merge branch 'brendt/fbp' into brendt/de-astra-fy-extended
bwohlberg Oct 9, 2024
e3aaf85
Update example index
bwohlberg Oct 11, 2024
eecad71
Update secondary indices
bwohlberg Oct 11, 2024
d6fc698
Update submodule
bwohlberg Oct 11, 2024
929aafb
Recent version of orbax-checkpoint not available via conda
bwohlberg Oct 11, 2024
b69e2eb
Remove mamba
bwohlberg Oct 11, 2024
6fbd0eb
Minor change
bwohlberg Oct 11, 2024
0fe5a14
Remove mamba
bwohlberg Oct 11, 2024
fc4fd48
Fix string syntax
bwohlberg Oct 11, 2024
b831694
Remove code that breaks notebook generation script
bwohlberg Oct 11, 2024
5ce5cd8
Bump jaxlib/jax max version
bwohlberg Oct 11, 2024
81d935a
Fix script
bwohlberg Oct 11, 2024
b0b86fc
Change default matplotlib backend selection
bwohlberg Oct 13, 2024
9ea0deb
Update submodule
bwohlberg Oct 13, 2024
f49430d
Clean up
bwohlberg Oct 14, 2024
5c9c974
Improve tests
bwohlberg Oct 15, 2024
e468e4b
Merge branch 'main' into brendt/fbp
bwohlberg Oct 15, 2024
250b00f
Merge branch 'main' into brendt/de-astra-fy-extended
bwohlberg Oct 15, 2024
e485390
Merge branch 'main' into brendt/fbp
bwohlberg Oct 15, 2024
b6bded8
Improve mask mechanism
bwohlberg Oct 15, 2024
62f0a50
Improve docs
bwohlberg Oct 15, 2024
46a6f6b
Merge branch 'brendt/fbp' into brendt/de-astra-fy-extended
bwohlberg Oct 15, 2024
d53007b
Minor docs edit
bwohlberg Oct 16, 2024
9781f22
Merge branch 'main' into brendt/de-astra-fy-extended
bwohlberg Oct 18, 2024
ce98fdf
Update submodule
Oct 18, 2024
7ddc41f
Update submodule
bwohlberg Oct 18, 2024
ab5588a
Update submodule
bwohlberg Oct 18, 2024
c4a7a49
Typing fixes
bwohlberg Oct 18, 2024
38ba3ae
Avoid mismatch with declared linop dtype
bwohlberg Oct 18, 2024
7c5ca89
Address review comment
bwohlberg Oct 21, 2024
a535919
Another search/replace error fix
bwohlberg Oct 22, 2024
d6f095e
Improve compatibility between companion scripts
bwohlberg Oct 22, 2024
771813b
Clean up
bwohlberg Oct 22, 2024
a28e0c5
Docstring fix
bwohlberg Oct 22, 2024
2d3506d
Cosmetic improvements
bwohlberg Oct 22, 2024
5b5a3fb
Fix angular sampling
bwohlberg Oct 22, 2024
22330c4
Clean up
bwohlberg Oct 23, 2024
a63310f
Fix angular sampling
bwohlberg Oct 23, 2024
118528e
Merge branch 'main' into brendt/ct-examples
bwohlberg Oct 23, 2024
83cec58
Typo fix
bwohlberg Oct 23, 2024
0ae6064
Update submodule
Oct 23, 2024
871f09d
Resolve warning when 64 bit float enabled
Oct 23, 2024
b19f24b
Update submodule
bwohlberg Oct 24, 2024
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Rename example
bwohlberg committed Oct 8, 2024
commit 30071df25c372967f9903ae5a107b7e98a3e79bd
File renamed without changes.