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it should be: r'[^DE](?=[AFILMV][^P])'
If you check the summary of the cleavage rules here: https://web.expasy.org/peptide_cutter/peptidecutter_enzymes.html the [^P] condition isn't included but it's included in the text above it and also seems to be implemented in their perl script.
I haven't checked other enzymes but there might be similar errors there too.
The text was updated successfully, but these errors were encountered:
This rule for thermolysin is incorrect:
pyteomics/pyteomics/parser.py
Line 844 in 66dcd9d
it should be:
r'[^DE](?=[AFILMV][^P])'
If you check the summary of the cleavage rules here: https://web.expasy.org/peptide_cutter/peptidecutter_enzymes.html the
[^P]
condition isn't included but it's included in the text above it and also seems to be implemented in their perl script.I haven't checked other enzymes but there might be similar errors there too.
The text was updated successfully, but these errors were encountered: