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Mascot MGF parsing error #153
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It may help to refer to https://www.matrixscience.com/help/data_file_help.html#PARAMS: PEPMASS is peptide mass "optionally followed by intensity and charge". Positive and negative charge states are specified as "N- to N+ where N is an integer". |
@vrkosk Yes So will you be able to correct this bug from pyteomics software? |
Thanks for reporting, I will try to implement support for this syntax shortly. |
@levitsky we can try to do a PR with the changes needed if is needed. |
Thanks Yasset, I don't mind fixing this at all, just having a busy weekend celebrating my birthday :) I should be able to have a fix for this on Monday. |
happy birthday my friend. All the best and I hope everything is going well for you. We probably will start contributing with some PRs in the future ;) |
While I was parsing an MGF file provided by Mascot itself(so which I can trust it is correct), I encountered with this error:
Please find the example mgf file in the following link:
https://drive.google.com/drive/folders/14wtAxOamqtf3A0BWQD_8_m5u0kpIRtQw?usp=sharing
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