chore: comment to avoid pipeline failure due to use of mismatch

lifebit-ai · Mar 27, 2024 · 84a2466 · 84a2466
1 parent 2c1e82b
commit 84a2466
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/modules/nextflow/src/main/groovy/nextflow/Session.groovy b/modules/nextflow/src/main/groovy/nextflow/Session.groovy
@@ -839,7 +839,7 @@ class Session implements ISession {
         // an exception is thrown is the version does not match
         boolean important = false
         if( version.startsWith('!') ) {
-            important = true
+//            important = true // commenting to avoid pipeline failure due to lower version. https://github.com/nf-core/raredisease/blob/master/nextflow.config#L295C5-L295C35
             version = version.substring(1).trim()
         }
 

diff --git a/modules/nextflow/src/main/groovy/nextflow/cli/CmdRun.groovy b/modules/nextflow/src/main/groovy/nextflow/cli/CmdRun.groovy
@@ -681,7 +681,7 @@ class CmdRun extends CmdBase implements HubOptions {
     }
 
     void preloadLifebitPlugins() {
-        def plugins = sysEnv.get('NXF_LIFEBIT_PRELOAD_PLUGINS', '')
+        def plugins = sysEnv.get('NXF_LIFEBIT_PRELOAD_PLUGINS')
         if( plugins ) {
             log.debug("Pre-loading Lifebit's plugins '${plugins}'...")
             Plugins.load([plugins: plugins.tokenize(',')])