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Adds lint config to ignore some tests (linting) #5

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Adds lint config to ignore some tests (linting) #5

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Commits on Mar 24, 2021

  1. Adds .nf-core-lint.yml and inits nf-core lint tests to False (#4) 

    Check here, introduced recently with nf-core tools > v1.13
https://nf-co.re/tools#linting-config
    @cgpu
    cgpu committed Mar 24, 2021
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  2. Adds main.pbs and slurm config

    @cgpu
    cgpu committed Mar 24, 2021
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  3. Config as param

    @cgpu
    cgpu committed Mar 24, 2021
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  4. Adds google.config

    @cgpu
    cgpu committed Mar 24, 2021
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  5. Bumps minimum disk from 10.GB to 30.GB 

    I was having a lot of error 3 @sk-sahu, I think the minimum per VM is 30.GB as we have in CloudOS.
Will double check and revisit, for now bumping to 30GB to check the hypothesis.
    @cgpu
    cgpu committed Mar 24, 2021
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  6. Adds local.config

    @cgpu
    cgpu committed Mar 24, 2021
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  7. Adds local config

    @cgpu
    cgpu committed Mar 24, 2021
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  8. Adds required projectDir = workflow.projectDir

    @cgpu
    cgpu committed Mar 24, 2021
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Commits on Mar 25, 2021

  1. updates cpu and memory to base

    @sk-sahu @cgpu
    sk-sahu authored and cgpu committed Mar 25, 2021
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  2. Updates cpus

    @cgpu
    cgpu committed Mar 25, 2021
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  3. Update base.config

    @sk-sahu @cgpu
    sk-sahu authored and cgpu committed Mar 25, 2021
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  4. Adds errorStrategy as params [default: terminate]

    @cgpu
    cgpu committed Mar 25, 2021
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  5. Skips by default [documentation,versions]

    @cgpu
    cgpu committed Mar 25, 2021
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  6. Workaround for projectDir in 20.01

    @cgpu
    cgpu committed Mar 25, 2021
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  7. Update v.NF to 20.01 in ci.yml; Adds fail-fast false

    @cgpu
    cgpu committed Mar 25, 2021
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  8. Adds conditional to not attempt to build redundant channels

    @cgpu
    cgpu committed Mar 25, 2021
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  9. Adds conditional, !validate redundant process channels

    @cgpu
    cgpu committed Mar 25, 2021
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  10. Sets Haplotype caller minimum heap to 4.GB (4000m)

    @cgpu
    cgpu committed Mar 25, 2021
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  11. Bumps sungle cpu mem to 2.GB 

    Because of this error:
https://cloudos.lifebit.ai/public/jobs/605c5de4cc2b27011245d5f9

  Execution failed: allocating: creating instance: inserting instance: Invalid value for field 'resource.machineType': 'zones/us-east1-b/machineTypes/custom-16-10240'. Memory size for 16.0 vCPU instance should be between 14848MiB and 106496MiB, while 10240MiB is requested.
    @cgpu
    cgpu committed Mar 25, 2021
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