update docs

lilab-bcb · Sep 23, 2020 · 8a57560 · 8a57560
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diff --git a/docs/index.rst b/docs/index.rst
@@ -14,7 +14,6 @@
    smart_seq_2
    drop_seq
    demultiplexing
-   doublet_detection
    cumulus
    topic_modeling
    command_line

diff --git a/docs/release_notes.rst b/docs/release_notes.rst
@@ -1,4 +1,4 @@
-Version 1.0.0 `TBD`
+Version 1.0.0 `September 23, 2020`
 ------------------------------------
 
 * Add *demultiplexing* workflow for cell-hashing/nucleus-hashing/genetic-pooling analysis.

diff --git a/docs/versions.rst b/docs/versions.rst
@@ -42,7 +42,7 @@ Stable version - v1.0.0
       - `8 <https://portal.firecloud.org/?return=terra#methods/cumulus/smartseq2_create_reference/8>`__
       - Generate user-customized genome references for SMART-Seq2 data.
     * - cumulus/cumulus
-      - `30 <https://portal.firecloud.org/?return=terra#methods/cumulus/cumulus/30>`__
+      - `31 <https://portal.firecloud.org/?return=terra#methods/cumulus/cumulus/31>`__
       - Run cumulus analysis module for variable gene selection, batch correction, PCA, diffusion map, clustering, visualization, differential expression analysis, cell type annotation, etc.
     * - cumulus/cumulus_hashing_cite_seq
       - `10 <https://portal.firecloud.org/?return=terra#methods/cumulus/cumulus_hashing_cite_seq/10>`__