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Remove unused 'tfs' parameter
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jvrakor committed Aug 23, 2019
1 parent b0cfea6 commit 34021b4
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Showing 2 changed files with 2 additions and 7 deletions.
1 change: 1 addition & 0 deletions CHANGELOG.rst
Original file line number Diff line number Diff line change
Expand Up @@ -19,6 +19,7 @@ Changed

Fixed
-----
- Remove unused ``tfs`` parameter


================
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8 changes: 1 addition & 7 deletions crc/bin/crc3.py
Original file line number Diff line number Diff line change
Expand Up @@ -66,11 +66,6 @@ def parse_args(args=None):
), required=False)
parser.add_argument("--motifs", dest="motifs", default=False, type=str,
help="Enter additional PWM file for the analysis", required=False)
parser.add_argument("-t", "--tfs", dest="tfs", default=None, type=str,
help=(
"Enter additional TFs (comma separated) to be used in the bindinf "
"analysis"
), required=False)
parser.add_argument("--config", dest="config", default='', type=str,
help="Enter genome configuration file to overwrite default paths",
required=False)
Expand All @@ -79,7 +74,7 @@ def parse_args(args=None):


def crc(enhancers, genome_input, chrom_path, output, analysis_name, bam=None, subpeak_file=None,
mask_file=None, activity_path=None, const_extension=100, number=1, motifs=False, tfs='',
mask_file=None, activity_path=None, const_extension=100, number=1, motifs=False,
config=''):
"""CRC main function."""
# =====================================================================================
Expand Down Expand Up @@ -279,6 +274,5 @@ def main(args=None):
const_extension=args.extension,
number=args.number,
motifs=args.motifs,
tfs=args.tfs,
config=args.config,
)

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