Simplifies plot to use phold & add `--no_medaka` as an option #72

	# This workflow will install Python dependencies, run tests and lint with a single version of Python
	# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python

	name: CI

	on:
	push:
	branches: [ main ]
	pull_request:
	branches: [ main ]


	jobs:
	tests:
	name: "Python ${{ matrix.python-version }}"
	runs-on: ${{ matrix.os }}

	defaults:
	run:
	shell: bash -el {0}

	strategy:
	matrix:
	os: [ubuntu-latest]
	python-version: ["3.10", "3.11", "3.12"]

	steps:
	- uses: "actions/checkout@v3"
	with:
	fetch-depth: 0

	# Setup env
	- uses: conda-incubator/setup-miniconda@v3
	with:
	activate-environment: sphae
	environment-file: environment.yml
	python-version: ${{ matrix.python-version }}
	auto-activate-base: false

	- name: "Setup Sphae on ${{ matrix.os }} for Python ${{ matrix.python-version }}"
	run: \|
	python -m pip install --upgrade pip
	pip install sphae
	sphae --help

Provide feedback