Tutorial for redEdge image processing
First, check out this repository, as it has all of the code and examples you'll need.
To do that you'll need git
Once you have git installed and the repository cloned, you are ready to start with the first tutorial. The setup tutorial will walk through installing and checking the necessary tools to run the remaining tutorials.
The code in these tutorials consists of two parts. First, the tutorials generally end in .ipynb and are the ipython (now Jupyter) notebooks that were used to create the web page tutorials linked below. You can run this code by opening a command line (linux) or Anaconda Command Prompt (Windows), navigating to the folder you cloned the git repository into, and running
jupyter notebook .
That command should open a web browser window showing the set of files and folder in the repository. Click the ...Setup.ipynb notebook to get started.
Second, a set of helper utilities is available in the micasense folder that can be used both with these tutorials as well as separtely. The purpose of this code is readability and clarity to help others develop processing workflows, therefore performance may not be optimal.
Find an issue with the tutorial? Create an issue on github.
Have a question? Double-check that you're able to run the setup notebook successfully, and then check the MicaSense Knowledgebase before contacting support.
To generate the HTML pages after updating the jupyter notebooks, run the following command in the repository directory:
jupyter nbconvert --to html --output-dir docs --execute *.ipynb
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